Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46540 253 / 7e-83 ENTH/VHS family protein (.1) AT1G08670 172 / 3e-52 ENTH/VHS family protein (.1) AT3G23350 156 / 1e-45 ENTH/VHS family protein (.1) AT5G11710 70 / 4e-13 ENTH/VHS family protein (.1) AT2G43160 69 / 7e-13 ENTH/VHS family protein (.1.2.3.4) AT3G59290 66 / 9e-12 ENTH/VHS family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040824 [exp] 536 / 0 AT3G46540 277 / 1e-92 ENTH/VHS family protein (.1) Lus10040297 [exp] 227 / 2e-73 AT3G46540 191 / 9e-60 ENTH/VHS family protein (.1) Lus10005164 [exp] 191 / 3e-56 AT2G39630 387 / 2e-131 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10021173 [exp] 185 / 2e-55 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10011810 [exp] 184 / 7e-55 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10023415 [exp] 145 / 4e-42 AT3G46540 123 / 3e-34 ENTH/VHS family protein (.1) Lus10026741 [exp] 71 / 3e-13 AT2G43160 705 / 0.0 ENTH/VHS family protein (.1.2.3.4) Lus10025527 [exp] 69 / 1e-12 AT2G43160 716 / 0.0 ENTH/VHS family protein (.1.2.3.4) Lus10007460 [exp] 69 / 2e-12 AT5G11710 538 / 0.0 ENTH/VHS family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G030500 [exp] 321 / 3e-109 AT3G46540 270 / 2e-89 ENTH/VHS family protein (.1) Potri.001G239200 [exp] 294 / 7e-99 AT3G46540 263 / 8e-87 ENTH/VHS family protein (.1) Potri.008G055600 [exp] 214 / 6e-68 AT3G46540 182 / 6e-56 ENTH/VHS family protein (.1) Potri.010G204100 [exp] 130 / 3e-36 AT1G08670 113 / 1e-30 ENTH/VHS family protein (.1) Potri.002G231100 [exp] 76 / 8e-15 AT2G43160 317 / 1e-96 ENTH/VHS family protein (.1.2.3.4) Potri.014G151300 [exp] 71 / 4e-13 AT2G43160 644 / 0.0 ENTH/VHS family protein (.1.2.3.4) Potri.006G234100 [exp] 67 / 6e-12 AT5G11710 479 / 2e-164 ENTH/VHS family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF01417 [flax] [poplar] ENTH ENTH domain
Representative CDS sequence Show only first row Show all	>Lus10016556 pacid=23144895 polypeptide=Lus10016556 locus=Lus10016556.g ID=Lus10016556.BGIv1.0 annot-version=v1.0 ATGTCGATTCTGAGAAAATCTATCAGCAGCTCCTACATGTCCGCCGGCGCCGCCGGCGGTGGCTCTGCCACTTCCTTTCTGGAATTCAAAAAGCAAGCTT CTTTCTTCTTCAAAGAGAAGATCAAGACTGCCCGATTGGCTCTCACCGACGTTACTCCTGCCCAGCTGTTGACTGAAGAAGCAACTAGTGGGAATCCATG GGCTCCAGACACTCGGACTCTTGGATCCATCTCAAGGGCTGCTTTCGAACTTGATGATTACCTCAGAATCGTTGAGATTCTTCACAAAAGATTGGTGAAA TTTGAAAGAAAGAACTGGAGGGCGACTTACCATTCCCTAATGTTGCTAGAGCGTTTGCTTACTCATGGTCCGGAAAGTGTAGCCAAAGAGTTCCATGAAG ATAGAGAAGCCATTAGAGAAGCTCAGGCTTTTCAGCACATTGATGAGAAAGGGTTCAATTGGGGGTTAGCTGTAAGGAAGAAATCAGACAGGATTCTGAA GCTGCTGGAGAATGAGGGTTTGCTCAAGGACGAGAGGGATAGAGCAAGAAAGCTAACCAGAGGGATCCAAGGCTTTGGTAGCTTCGAGAAAACTTCATCT TCGAAACTCGGCATTCTGCAGCAATCATTTGGATGGAGCAATTCGCAGTCCAATGACGATTCCGAGGAGAACAAGATTGTGTCTTATGACAAAGAGAAAT TGTTCCAGAAAGTGGAGAGTTCTATGAACAAAGATGCAATATTTTCTGTGGAGTCTGTGAACAGAAACCATCGGCTCGAGAAAATCGAAACAAGGTTGAA GGAAAACATGTCTCCTGATGATGAGGAAGAACAAGTAAATCTGCTTCTCAGAGAGTATCAAGTAGCAGTAGTTGCTGCAGAAGAGGATCATCATCCATTC ACTAATACTGAGCATCAAACAGTTGCTTCTTCACTCTTGTCAGCTAATGATGGAATCATCCTGCAAGGATGA
AA sequence Show only first row Show all	>Lus10016556 pacid=23144895 polypeptide=Lus10016556 locus=Lus10016556.g ID=Lus10016556.BGIv1.0 annot-version=v1.0 MSILRKSISSSYMSAGAAGGGSATSFLEFKKQASFFFKEKIKTARLALTDVTPAQLLTEEATSGNPWAPDTRTLGSISRAAFELDDYLRIVEILHKRLVK FERKNWRATYHSLMLLERLLTHGPESVAKEFHEDREAIREAQAFQHIDEKGFNWGLAVRKKSDRILKLLENEGLLKDERDRARKLTRGIQGFGSFEKTSS SKLGILQQSFGWSNSQSNDDSEENKIVSYDKEKLFQKVESSMNKDAIFSVESVNRNHRLEKIETRLKENMSPDDEEEQVNLLLREYQVAVVAAEEDHHPF TNTEHQTVASSLLSANDGIILQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46540			ENTH/VHS family protein (.1)		Lus10016556 [exp]	0	1
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10013462 [exp]	5.8	0.9240
AT5G39950		ATTRXH2, ATTRX2...	Arabidopsis thioredoxin h2, th...		Lus10005258 [exp]	5.8	0.8843
AT5G41810			unknown protein		Lus10001907 [exp]	5.9	0.9283
AT1G01490			Heavy metal transport/detoxifi...		Lus10017520 [exp]	11.7	0.9169
AT5G43200			Zinc finger, C3HC4 type (RING ...		Lus10019685 [exp]	13.4	0.8965
AT1G55170			unknown protein		Lus10037647 [exp]	13.9	0.8493
AT5G51160			Ankyrin repeat family protein ...		Lus10041537 [exp]	14.9	0.9119
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10026041 [exp]	16.4	0.9049
AT3G06240			F-box family protein (.1)		Lus10014793 [exp]	17.2	0.9138
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10030966 [exp]	17.4	0.9163

Compare expression of checked genes

Lus10016556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.