Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45910 488 / 2e-160 U-box domain-containing protein kinase family protein (.1) AT5G57035 344 / 5e-106 U-box domain-containing protein kinase family protein (.1) AT3G49060 334 / 5e-102 U-box domain-containing protein kinase family protein (.1.2) AT2G19410 314 / 2e-94 U-box domain-containing protein kinase family protein (.1) AT4G25160 309 / 1e-92 U-box domain-containing protein kinase family protein (.1) AT5G61550 308 / 5e-92 U-box domain-containing protein kinase family protein (.1.2) AT5G51270 306 / 2e-91 U-box domain-containing protein kinase family protein (.1) AT5G61560 305 / 4e-91 U-box domain-containing protein kinase family protein (.1.2) AT1G72760 268 / 1e-78 Protein kinase superfamily protein (.1) AT1G17540 262 / 5e-76 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040825 [exp] 1510 / 0 AT2G45910 496 / 1e-163 U-box domain-containing protein kinase family protein (.1) Lus10036362 [exp] 407 / 1e-128 AT3G49060 895 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10014772 [exp] 403 / 4e-127 AT3G49060 901 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10036363 [exp] 387 / 3e-123 AT2G45910 528 / 9e-178 U-box domain-containing protein kinase family protein (.1) Lus10039245 [exp] 347 / 2e-106 AT3G49060 556 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10027490 [exp] 340 / 1e-104 AT3G49060 514 / 2e-171 U-box domain-containing protein kinase family protein (.1.2) Lus10036359 [exp] 300 / 2e-89 AT2G45910 598 / 0.0 U-box domain-containing protein kinase family protein (.1) Lus10018835 [exp] 291 / 2e-86 AT2G45910 522 / 4e-174 U-box domain-containing protein kinase family protein (.1) Lus10026439 [exp] 275 / 4e-82 AT5G12000 662 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G030400 [exp] 934 / 0 AT2G45910 398 / 5e-126 U-box domain-containing protein kinase family protein (.1) Potri.001G239100 [exp] 917 / 0 AT2G45910 473 / 6e-156 U-box domain-containing protein kinase family protein (.1) Potri.002G160200 [exp] 407 / 6e-129 AT2G45910 650 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.012G143100 [exp] 403 / 2e-128 AT3G49060 706 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Potri.014G084900 [exp] 404 / 2e-127 AT2G45910 857 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.002G160300 [exp] 380 / 3e-120 AT2G45910 559 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.004G233000 [exp] 347 / 6e-107 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.006G147000 [exp] 312 / 2e-94 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.018G061600 [exp] 266 / 2e-77 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G225300 [exp] 261 / 2e-75 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10016557 pacid=23144802 polypeptide=Lus10016557 locus=Lus10016557.g ID=Lus10016557.BGIv1.0 annot-version=v1.0 ATGGAGCTCCTAAACCCGCTCCAACCGGTTCACCATCATCATCACAACCCGGCGTTCTCCTCCGGTTCACCGTCGCCGGTGTCAGCTGAATTCCGGTTCG GGTTCGGCCCGATTATGGAAACCCAGGTGGCTGATATTGTTGAAGAAGCAGCAACTGAACACAGCATCGATTCTGCAACAAGCAATGGGTTGGCCAAGGT TTATGTGGCGGTAGGGAAATCTGTGGAAAAGTCAGCAGCTTTGCTTAAATGGAGCTTCAACTTCTTTCCCGGCCACTGTATTTGCTTGCTCCATGTCCAC CGTCCTTCTCCTCTCATTCCAACTCTCTTGGGGAAATTGCCAGCGAATGGAGCGAATCCTGAAGTAGTGTTGGCTCATAGAAATGAGGAGAGGCAGGAGA TGATGCAGCTTTTGGAGCGTTACTTGGCCATTTGTCGTCGAGCTAAGGTTGAAGCAGGTTTTGTTTCTAAGGAATGTGAACAAGTTCACAAGGGAATTCT GGACTTGGTGGACCAGGAAGGTATCAAGAAGCTTGTTATTGGGGCTGTACCGGAGCATTGGTTGAAGGTTAAGAAGAGTTCCTCTAAGGTGGATTATGTG GCTAAGAACGCTCCGGTATGCTGTCAAATTTGGTTTATCAACAAAGGGAAACTTGTTTGGACAAGAGAAGCTTCCGAGGAAGGTTCGAACCATTTCCAGG CCGATGAAAATGCTAATCGCGGAGTTGCTGTTACTATGAGATCACAGCGGTTTATGCATTCTGGTAGAGGAATAACTTGTGCCAGAGTCAATAACTGGGT ACTCCAGACTAATTGCACTGAAGTGCCTGTGGCATCTACTTCTATCAATGGATGTCTGCCGCATCGATTCAGTACAACCACTAGTTGGTCTGGATCAGGG TCTACTGAAAAAAGATTGTCTTCTGATTTTGATTGGGAAAGCTTATATTGTCAGCTTGAGGAAGTCAATGTTGAAGCAGAAGTGTTGAGGAATGCAGCAA ATCAGGAGTTGGTCAACTGCAGAAGATTAGAACTTGAAGCTCTGCAAGCAATTGGGAAGGTCAAAACCTTTGAATGTACACTTGCACATGAAGTGGAGCT AAGAAGAGAAGCTGAGGATGAACTCAGAAACGTACGCGAAGAACAAGACAAACTATTGGAAGAGAGGAAAGAGCTCAACAGAGAGCTTCAAAGAACAATG AGAAGTGTTTCCCTTCTCGAGAATCGTGCACAGGAAGCGAATCATAGGCGCGATGAAGCAGCTGCAGAGTTAAGACACATTCAGAAATCACTTGCTTCCT TGCGTCAGGAGAAACAACGAATCAGGCGGCAAAAGATGGAAGCTTGGCACCGGCTTGAACGATGGCAACCCGGTGGTGCTGCTAAATGCAATGGCTTTCT TGGCTATGCCAACGAATTGCCTGAATTTCCATTATCCGACCTGGAAAATGCAACATGTGATTTCTCTGAGAGCTTCAAACTCGGTGGAGGAACTTATGGT TGTGTCTACAAGGGTGAAATGCTGGGCAGAACTGTTGCTGTTAAGAAACTACATTCACACAACATGCAAGGCCAATCGGAGTTTCAAAAAGAGGTCCAAG TTCTGGGAAAATTGCAACACCCTCATCTTGTGACTTTACTCGGAGCATGCACTGAAGCATGGTGTCTTATATACGAGTACTTGCCGAATGGGAGTCTCCA AGACCGCCTTCTGACGAAAAGCAACAACTTGTCATTAACTTGGCAAGCAAGAACAAGGATTATATCCGAGATTGCGAGCGGCCTTTCGTTTCTTCACTCT TCCAAACCCGAAAAGATAGTCCATGGTGACCTGAAACCTCAACACATCTTACTCGATTCTGACCTCGTCTGTAAGATATGCGAGTTTGGAATCTGCAGGC TCGTGTCTGAGGATACCGAACCAAATTTCAGTAGAATCACTGAACCTAAGGGATCATTCCCTTATACGGATCCCGAGTTCCATAGGGCTGGAGTTCTGAC ACCGAAATCCGATGTCTATTCGTTTGGTGTCATTATCTTACAGCTGCTCACAGGAAGGCCTCCTGTTGGGTTGGCAAATGAGGTGCGTAGAATGAGATCA TCTGGGAAACTCTCATCCATTTTGGACCGTTCAGCAGGAGAATGGCCGATTTTCGTGACAAAACGTCTCTCCGATTTGGCAATGCAGTTCTGCGAACTGA ACAATCGGGATAGACCCGAGTTGTCTCCTGCTCTCGTGAGGGAGCTCGAGCAACTTCATGTATCGGAGGAGCGGCCTGTGCCATCTTTTTTCTTGTGCCC CATTCTTCAGGAAATAATGCATGATCCGCAAATTGCGGCTGATGGATTCTCATATGAGGGCGAAGCAATTCGAGAATGGTTAGGGAATGGTCATGAGACT TCTCCAATGACCAATCTGAAGTTGAGCCATTTGCATCTTACTCCTAACCATGCCCTCCGTCTCGCAATCCAAGAATGGCTTTGCAGTTCTTAA
AA sequence Show only first row Show all	>Lus10016557 pacid=23144802 polypeptide=Lus10016557 locus=Lus10016557.g ID=Lus10016557.BGIv1.0 annot-version=v1.0 MELLNPLQPVHHHHHNPAFSSGSPSPVSAEFRFGFGPIMETQVADIVEEAATEHSIDSATSNGLAKVYVAVGKSVEKSAALLKWSFNFFPGHCICLLHVH RPSPLIPTLLGKLPANGANPEVVLAHRNEERQEMMQLLERYLAICRRAKVEAGFVSKECEQVHKGILDLVDQEGIKKLVIGAVPEHWLKVKKSSSKVDYV AKNAPVCCQIWFINKGKLVWTREASEEGSNHFQADENANRGVAVTMRSQRFMHSGRGITCARVNNWVLQTNCTEVPVASTSINGCLPHRFSTTTSWSGSG STEKRLSSDFDWESLYCQLEEVNVEAEVLRNAANQELVNCRRLELEALQAIGKVKTFECTLAHEVELRREAEDELRNVREEQDKLLEERKELNRELQRTM RSVSLLENRAQEANHRRDEAAAELRHIQKSLASLRQEKQRIRRQKMEAWHRLERWQPGGAAKCNGFLGYANELPEFPLSDLENATCDFSESFKLGGGTYG CVYKGEMLGRTVAVKKLHSHNMQGQSEFQKEVQVLGKLQHPHLVTLLGACTEAWCLIYEYLPNGSLQDRLLTKSNNLSLTWQARTRIISEIASGLSFLHS SKPEKIVHGDLKPQHILLDSDLVCKICEFGICRLVSEDTEPNFSRITEPKGSFPYTDPEFHRAGVLTPKSDVYSFGVIILQLLTGRPPVGLANEVRRMRS SGKLSSILDRSAGEWPIFVTKRLSDLAMQFCELNNRDRPELSPALVRELEQLHVSEERPVPSFFLCPILQEIMHDPQIAADGFSYEGEAIREWLGNGHET SPMTNLKLSHLHLTPNHALRLAIQEWLCSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45910			U-box domain-containing protei...		Lus10016557 [exp]	0	1
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10014837 [exp]	1.7	0.8733
AT3G49060			U-box domain-containing protei...		Lus10014772 [exp]	2.8	0.8470
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	3.2	0.8513
AT1G06320			unknown protein		Lus10038213 [exp]	3.7	0.8108
AT4G12010			Disease resistance protein (TI...		Lus10016029 [exp]	5.5	0.8105
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10022246 [exp]	10.5	0.8456
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Lus10038488 [exp]	12.4	0.7992
AT2G23140			RING/U-box superfamily protein...		Lus10032023 [exp]	13.6	0.8377
AT4G01570			Tetratricopeptide repeat (TPR)...		Lus10007863 [exp]	13.7	0.8144
					Lus10024153 [exp]	13.8	0.8194

Compare expression of checked genes

Lus10016557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.