Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37610 39 / 0.0006 unknown protein AT3G20900 37 / 0.0009 unknown protein AT5G02420 38 / 0.001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040827 [exp] 243 / 2e-82 AT3G20898 44 / 8e-06 unknown protein Lus10037925 [exp] 51 / 3e-08 AT5G02420 47 / 2e-07 unknown protein Lus10038653 [exp] 47 / 9e-07 AT5G02420 47 / 2e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G239000 [exp] 66 / 1e-13 AT5G02420 59 / 1e-11 unknown protein Potri.009G030200 [exp] 61 / 9e-12 AT5G02420 49 / 5e-08 unknown protein Potri.010G231600 [exp] 50 / 2e-08 AT5G02420 44 / 1e-06 unknown protein Potri.010G231700 [exp] 47 / 4e-07 AT5G04470 / SIAMESE, cyclin-dependent protein kinase inhibitors (.1) Potri.008G029600 [exp] 46 / 1e-06 AT5G02420 48 / 5e-08 unknown protein Potri.006G084700 [exp] 46 / 3e-06 AT5G02420 57 / 1e-10 unknown protein Potri.009G003400 [exp] 45 / 3e-06 AT5G02420 45 / 7e-07 unknown protein Potri.001G212300 [exp] 42 / 4e-05 AT5G02420 43 / 8e-06 unknown protein Potri.010G045200 [exp] 40 / 0.0002 AT1G10690 92 / 2e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016559 pacid=23144795 polypeptide=Lus10016559 locus=Lus10016559.g ID=Lus10016559.BGIv1.0 annot-version=v1.0 ATGCTCCTTCCCGAGAAAGATCACCTCAAGGACGACGACGATAGTGATGGTCCCCACCAGTTCCGCCTCCTCCTCACCCGCTCCTCGCCGGCCACCTCTT CCGATTTCGAAATAGATCAGCACCAGCTACTGTGCGGGATTCTGACTCCAATTTCACAAGATTCCACGTCATCGTCCTCGTCATCATCTCACGAAAATCG CCAAATTGATGCGCCGGTGCAACAACAACAACCGTTAGATCATCAAGAAGAAGAAGAAGAAGCGGTGGCTGAAAATGATTGCGCCAGCGATAATTATCCT GAGCTGGCGGTGAAATTGCCGTCCACGTCATCAGGACAAGAATTCATTAATGACGACGACGGTGGCGTGAGGACTCCGACATCTCCGGGCAGTAGAATTC CATCGGTCCTAACATGCCCTCCGGCTCCGAGAAAGGCTAAATCGCGGCCGATTACAACCAAGAGGAAACTGATGGAAGGTCGAAGAGTGCTGCTTGTGGA TCTGAGTTCCGACGAGATTAATTCCTTGTTCTCTCCGCGGGCGGTGGATCTATACTCCGGCGGTGGCAAGAAAGCTAGACAATAA
AA sequence Show only first row Show all	>Lus10016559 pacid=23144795 polypeptide=Lus10016559 locus=Lus10016559.g ID=Lus10016559.BGIv1.0 annot-version=v1.0 MLLPEKDHLKDDDDSDGPHQFRLLLTRSSPATSSDFEIDQHQLLCGILTPISQDSTSSSSSSSHENRQIDAPVQQQQPLDHQEEEEEAVAENDCASDNYP ELAVKLPSTSSGQEFINDDDGGVRTPTSPGSRIPSVLTCPPAPRKAKSRPITTKRKLMEGRRVLLVDLSSDEINSLFSPRAVDLYSGGGKKARQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37610			unknown protein		Lus10016559 [exp]	0	1
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Lus10042658 [exp]	3.6	0.9652
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Lus10021731 [exp]	4.5	0.9587
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Lus10041496 [exp]	7.7	0.9549
AT3G20898			unknown protein		Lus10040827 [exp]	10.7	0.9049
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10013828 [exp]	12.4	0.9554
AT4G09990			Protein of unknown function (D...		Lus10005822 [exp]	15.7	0.9506
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Lus10034267 [exp]	17.9	0.9476
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10002837 [exp]	19.1	0.9521
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10026541 [exp]	23.3	0.9481
AT5G37478			TPX2 (targeting protein for Xk...		Lus10020800 [exp]	23.4	0.9480

Compare expression of checked genes

Lus10016559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.