Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040828 [exp] 203 / 3e-66 AT5G02440 66 / 1e-13 unknown protein Lus10023770 [exp] 44 / 2e-05 AT5G02440 97 / 2e-25 unknown protein Lus10000246 [exp] 41 / 9e-05 AT5G02440 47 / 1e-07 unknown protein Lus10024400 [exp] 42 / 0.0002 AT5G02440 88 / 1e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G238900 [exp] 66 / 6e-13 AT5G02440 81 / 4e-19 unknown protein Potri.009G030100 [exp] 64 / 4e-12 AT5G02440 98 / 1e-25 unknown protein Potri.006G084400 [exp] 57 / 1e-09 AT5G02440 78 / 5e-18 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016560 pacid=23144906 polypeptide=Lus10016560 locus=Lus10016560.g ID=Lus10016560.BGIv1.0 annot-version=v1.0 ATGTCAGCTATGCAGAAAACTATGAAGATCGAGCTTCCCCCACGCATGAGCTTATTGTACGAACAGAAAACTATCTTTGTTTCGTCTCTACAACAACGAA TCAGCATGGTTAAAGATCCGTGTATGAAGTACATTTGTAAACACACACTGGAAGAGGGACTGGGGAGTTTACAGAGCCTGAATGTGAGAGTTCCAGGTTG GGTCTCCTTCAACAATTTCCTCACTGTTTCACCCACTTGGTCCGTATCAGATTCCTCGTCTGATCTTGACACTGAGTCAACAGGGTCGTTCTTCCATGAC AAGACCATCACACTGGGAAGCCTGATAGGGGGTTCCAGCATACTAGAGCTATCTAAGAAATCGAAAAGGGGGAAGAAGAAGATTGAACCGCTGAGAGCGA AAAAGGCCTGCAAATCGAAACCGTGGATATTCTCCTTGTGTGCAAAGGACCCTATAGCTGATCATGATTCTCAAGGATTGAAGAAAGACAATGTTGAAGC TCCTCCATCATTAGGACACTTTCTGGAAGTGGAGAGAAGAACAGCCAGTAATGGATGCAGAAGAAGTAACCAAAGCCAGAGCTCTGCAAACTCACTCTTT GTTGATGGCCATGTAGCTCCTCCTAGGCACAGTGCTGATAGTGGAAGTAGACATGGTCCAGTGTTGTTGCGTTCTTGTGTATGTGGCCATTCCTCTTAA
AA sequence Show only first row Show all	>Lus10016560 pacid=23144906 polypeptide=Lus10016560 locus=Lus10016560.g ID=Lus10016560.BGIv1.0 annot-version=v1.0 MSAMQKTMKIELPPRMSLLYEQKTIFVSSLQQRISMVKDPCMKYICKHTLEEGLGSLQSLNVRVPGWVSFNNFLTVSPTWSVSDSSSDLDTESTGSFFHD KTITLGSLIGGSSILELSKKSKRGKKKIEPLRAKKACKSKPWIFSLCAKDPIADHDSQGLKKDNVEAPPSLGHFLEVERRTASNGCRRSNQSQSSANSLF VDGHVAPPRHSADSGSRHGPVLLRSCVCGHSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02440			unknown protein		Lus10016560 [exp]	0	1
AT5G02440			unknown protein		Lus10040828 [exp]	1.7	0.7633
AT3G54880			unknown protein		Lus10038690 [exp]	4.0	0.6967
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10019786 [exp]	6.8	0.7125
AT1G72190			D-isomer specific 2-hydroxyaci...		Lus10009456 [exp]	8.1	0.6254
AT1G49740			PLC-like phosphodiesterases su...		Lus10019843 [exp]	12.0	0.6283
AT1G10750			Protein of Unknown Function (D...		Lus10013046 [exp]	15.1	0.6999
AT3G22104			Phototropic-responsive NPH3 fa...		Lus10039710 [exp]	15.4	0.6335
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030456 [exp]	19.2	0.6927
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10040149 [exp]	19.2	0.6564
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10042140 [exp]	21.0	0.6591

Compare expression of checked genes

Lus10016560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.