Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28840 613 / 0 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) AT5G07270 155 / 5e-42 XBAT33 XB3 ortholog 3 in Arabidopsis thaliana (.1) AT5G57740 147 / 7e-39 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT5G02620 87 / 4e-18 ATANK1, ANK1 ankyrin-like1 (.1) AT3G04710 80 / 7e-16 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT5G60070 79 / 2e-15 ankyrin repeat family protein (.1) AT1G07710 78 / 2e-15 Ankyrin repeat family protein (.1) AT2G31820 76 / 2e-14 Ankyrin repeat family protein (.1) AT3G12360 72 / 2e-13 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT1G05640 68 / 6e-12 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040829 [exp] 723 / 0 AT2G28840 546 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10005754 [exp] 158 / 5e-43 AT5G07270 753 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Lus10027441 [exp] 155 / 8e-42 AT5G07270 719 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Lus10015503 [exp] 130 / 2e-32 AT5G57740 614 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Lus10019974 [exp] 127 / 9e-32 AT5G57740 630 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Lus10003748 [exp] 76 / 1e-14 AT1G07710 83 / 6e-18 Ankyrin repeat family protein (.1) Lus10008329 [exp] 74 / 7e-14 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10003986 [exp] 73 / 1e-13 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1) Lus10002621 [exp] 73 / 1e-13 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G030000 [exp] 704 / 0 AT2G28840 619 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.001G238800 [exp] 697 / 0 AT2G28840 657 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.015G141400 [exp] 158 / 6e-43 AT5G07270 795 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Potri.012G139100 [exp] 149 / 1e-39 AT5G07270 782 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Potri.006G176600 [exp] 137 / 3e-35 AT5G57740 597 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Potri.018G098400 [exp] 136 / 6e-35 AT5G57740 611 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Potri.008G048400 [exp] 79 / 2e-15 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.005G054800 [exp] 78 / 3e-15 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.007G099600 [exp] 77 / 6e-15 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 76 / 1e-14 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10016561 pacid=23144850 polypeptide=Lus10016561 locus=Lus10016561.g ID=Lus10016561.BGIv1.0 annot-version=v1.0 ATGGGTCAGAAACTCAGCTGCGTAGGGAATCAAGAGCACGGGGAGCTGTTCGCAGCCGTGCAGTTTGGTGAGCTTGAAATCGTCAAGATTATGCTCGACA GAGACCCGTCGTTGATTCACCAAACCACCGTCTACGATCGGCAGTCTCCGCTTCATATCGCCGCCGCCAATGGCCAGATCGAGATTTTGTCAATGCTTTT GGCACGATCCGTGGATCCGGATGTTGTGAACCGTCACAAGCAGACGCCACTAATGTTGGCTGCAATGCATGGGAAGATCTCCTGTTTGGAGATGCTCATC GAGGCAGGGGCAAATATATTGAAGTTTGATTCGCTAAATGGACGGACTTGCTTGCACTATGCGGCTTACTATGGCCATTCTGATTGTCTTCAAGTCATTC TTTCCACTGCTCAGTCCAGCCCTGTTGCTGCATCCTGGGGATATGCAAGATTTGTTAATATTAGGGACGGCAGAGGAGCCACACCATTGCATTTAGCTGC ACGTCAAAGACAGCCTGCGTGTGTTCATATCTTATTGGACAATGGTGCACTTGTTTGTGCTTCTACTGGCGGATATGGCTGTCCAGGAAGCACTCCTCTT CATCTAGCGGCTAGAGGAGGGTCCCTTGATTGCATCCGGGAGTTGTTAGCGTGGGGTGCTGATCGTCTTCAGAGAGATGCATCAGGGAGGATTCCCTATG GAGTTGCCTTGAAGCACAAACAATCAGACTGTGCAGCACTATTGAATCCTTCATCAGCAGAGCCTCTTGTGTGGCCTTCGCCTTTGAAGTTCATCAGCGA GCTTAACCAAGAAGCTAAAGCTTTGTTGGAACGTGCCCTGATGAAGGCGAATCGTGAACGAGAGAAGACCATCTTCAAAGGATCATCTCCTTGCAAGGGC CAATCGTCACCACAAGTTACCGAGATCGAGATAGATGACAATGCATCGGAGATAAGCGATACCGAGCTATGCTGTATCTGCTTCGAGCAGGTATGCACAA TCGAAGTCCAGAACTGCGGACACCAAATGTGCGCAAATTGCACGCTGGCCCTCTGCTGCCACAACAAGCCGAACCCAACAACAGCATCAGTGACACCACC CGTATGCCCGTTCTGTCGAAGCACCATCGCTCGTCTCGTCGTTGCAAGAGTCAAAAACTGTTCCGAAATCGATCCTGATCAGGATCTCGGAGAAGGGTTC GACTCCCCGAAGCTGAGGAAGTCGTGGAAGTCGAGAAACCTGAGCGAAGGAAGCAGCAGCTTCAAGGGTCTGTCAGCAAACTTGGGCTCATTTGGGAAAA TGGGGGGCCGTGGCTCAGGAAGGATTGCAGCAGATAATGAGTGGATGGACAAACAATGA
AA sequence Show only first row Show all	>Lus10016561 pacid=23144850 polypeptide=Lus10016561 locus=Lus10016561.g ID=Lus10016561.BGIv1.0 annot-version=v1.0 MGQKLSCVGNQEHGELFAAVQFGELEIVKIMLDRDPSLIHQTTVYDRQSPLHIAAANGQIEILSMLLARSVDPDVVNRHKQTPLMLAAMHGKISCLEMLI EAGANILKFDSLNGRTCLHYAAYYGHSDCLQVILSTAQSSPVAASWGYARFVNIRDGRGATPLHLAARQRQPACVHILLDNGALVCASTGGYGCPGSTPL HLAARGGSLDCIRELLAWGADRLQRDASGRIPYGVALKHKQSDCAALLNPSSAEPLVWPSPLKFISELNQEAKALLERALMKANREREKTIFKGSSPCKG QSSPQVTEIEIDDNASEISDTELCCICFEQVCTIEVQNCGHQMCANCTLALCCHNKPNPTTASVTPPVCPFCRSTIARLVVARVKNCSEIDPDQDLGEGF DSPKLRKSWKSRNLSEGSSSFKGLSANLGSFGKMGGRGSGRIAADNEWMDKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28840		XBAT31	XB3 ortholog 1 in Arabidopsis ...		Lus10016561 [exp]	0	1
AT1G24160			unknown protein		Lus10029213 [exp]	7.1	0.7506
AT5G67390			unknown protein		Lus10011080 [exp]	34.6	0.7252
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10040038 [exp]	37.8	0.7196
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10033643 [exp]	39.0	0.6851
AT4G38520			Protein phosphatase 2C family ...		Lus10024008 [exp]	80.9	0.6725
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10002597 [exp]	81.2	0.6839
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10015913 [exp]	91.2	0.6920
AT1G67170			unknown protein		Lus10035371 [exp]	113.5	0.6722
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10015457 [exp]	116.3	0.6761
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10040679 [exp]	120.2	0.6181

Compare expression of checked genes

Lus10016561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.