Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27640 1009 / 0 ATTIF3B1, ATEIF3B-1, EIF3B-1, TIF3B1 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) AT5G25780 988 / 0 ATEIF3B-2, EIF3B-2 eukaryotic translation initiation factor 3B-2 (.1) AT1G49015 205 / 1e-61 DPP6 N-terminal domain-like protein (.1) AT1G73180 87 / 8e-18 Eukaryotic translation initiation factor eIF2A family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026904 [exp] 1212 / 0 AT5G27640 1167 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Lus10020098 [exp] 1189 / 0 AT5G27640 1108 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Lus10040831 [exp] 819 / 0 AT5G27640 697 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Lus10004803 [exp] 70 / 4e-12 AT1G73180 623 / 0.0 Eukaryotic translation initiation factor eIF2A family protein (.1.2) Lus10038840 [exp] 43 / 0.0003 AT3G16380 62 / 2e-11 poly(A) binding protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G015200 [exp] 1098 / 0 AT5G27640 1168 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Potri.006G267500 [exp] 1083 / 0 AT5G27640 1087 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Potri.013G126300 [exp] 77 / 1e-14 AT1G73180 703 / 0.0 Eukaryotic translation initiation factor eIF2A family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF08662 [flax] [poplar] eIF2A Eukaryotic translation initiation factor eIF2A CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10016562 pacid=23144892 polypeptide=Lus10016562 locus=Lus10016562.g ID=Lus10016562.BGIv1.0 annot-version=v1.0 ATGGCGGACGTTATGGTTCCGAAGGATGTAGGAGTTTTGGCGGCGGAGGCCGGAATCGATCTTTCACAAGTTGATTTCGACTCAATACAGCTGCCGCCGG GAGAAAATTGCGGCATCCTCAGTGATGACGATGATATTCTCCAAGAGGAGCAGCTGGATTTCGATTCTGGTTTCGGAAACATCATTGTGGTGGATAATCT CCCTGTTGTTCCTTTGGGGAAATTCGAGAAGCTTGAGGGAGTCATAAGGAAAATCTTCTCCCAAACTGGGGTTATCAAGGAGGATGGTCTCTGGATGCCA CTTGATCCCGAGACCAAGAAAACCAATGGTTATTGCTTCATTGAGTACAACACGCCTCAGGAAGCTGAGCTCGCTAAAGAGCAAACCAACGGGTATAGGT TGGACAAATCCCACTTTTTCATTGTCAATATGTTTGATGACTTCGATAAGTTCATGAGAATTCCAGATGAATGGGCAGCTCCGGAGGTTAAGCCATATGT TCCTGGGGAAAACCTTCAGCACTGGCTAACCGATGAAAAGGCCAGGGATCAGTTTGTAATCCGTGCAGGCACCGATACCGAAGTTTTCTGGAATGATACT AGACATTTGAAGCCTGACCCAGTCTACAAGCGGGCTTACTGGACAGAGAGCTTTGTTCAGTGGTCTCCACTTGGAACGTACCTAGCTACAGTTCATAGGC AAGGGGCAGCTGTTTGGGGTGGTGCATCGTCTTTCAACCGGCTTATGCGTTATGCTCATCCTCAGGTTAAAATGATCGACTTTTCCCCGGGGGAGAAATA CTTGGTAACCTACAGTAGTCATGAACCAAGCAATCCACGGGATGCAAATAGAGTGTTAATCAATATTTTTGATGTGAGGACTGGTAAAGTGAGGAGGGAT TTTAAAGGAAGTGCGGATGAATTTACAGCTAATGGTGTCACAGATGTTCAATGGCCAGTTTTTCGCTGGGGTGGCGGAAAGGGTGACAACTACTTTGCGA AATTGGGTAAAAATATGATCTCTGTCTATGAAACTGAAACTTTCAGTCTCATTGATAAGAAATCTATAAAGGTTGAGAATATCGTGGACTTCACTTGGTC TCCAGCCGATCCGATTATTGCACTCTTCGTCCCAGAGCTTGGTGGTGGTAACCAGCCGGCTAGGGTCAGTCTTGTTCAAATTCCCAGTAAACAGGAACTG AGGCAGAAGAATCTTTTCAGTGTAAAAGACTGCACAATGCACTGGCAAAGTGCTGGGGACTACCTCGCCGTGCAGGTGGACCGATACACAAAGACCAAGA AAAACACGTATACAGGCTTTGAGCTTTTCAGAATTAAAGAACGCGATATTCCCATCGAGGTTCTGGAGCTTGAAAATAAAAACAACAAGATCATCGCTTT TGGCTGGGAACCAAAGGGTCACAGGTTTGCTGTTATTCACGGCGATGGTCCGAGGCCTGACATAAGCTTTTATTCAATGAAGACCGCTCAGCACTCAGGG AGAGTGTCCAAGCTTACTACTCTGAAAGGAAAACAGGCAAATGCTCTTTTCTGGTCCCCTTTGGGGCATTACATAATACTCGCAGGAATGAAGGGTTTCA ATGGTCAGTTGGAATTTTATAATGTTGATGAGCTTGAAACCATGGCCACTGCTGAGCACTTTATGGCGACGGATGTCGTATGGGATCCTACTGGAAGGTA TGTCGCAACAGCAGTAACTTCAGTTCACCATGAGATGGAAAATGGGTTCAATATCTGGCCACCGTCATTCTTGAGCCCCGAGAAGGAGGAAGAGATTACA AAGAACCTGAAGAAGTACAGCAAGAAGTACGAGGCAGAGGACCAAGACGTGTCGTTGCAATTGAGTGAGCAAGATCGGGAGAAGCGGAGATTGCTGAAGG ATGAATGGGCGCAATGGGTGAGCCGGTGGAATCAGCTGCACGAAGAGGAGGAGCCGGAGAGACGAGAGTTGCGAGATGGAGAGGCTAGCGACGAAGAAGA GGTGTACGAAGCCATGGAAGTTGAAGTCGAGGAAGTTTTGGATGTTTCTGAGGAGGTTGTTTCATTCGAGTAA
AA sequence Show only first row Show all	>Lus10016562 pacid=23144892 polypeptide=Lus10016562 locus=Lus10016562.g ID=Lus10016562.BGIv1.0 annot-version=v1.0 MADVMVPKDVGVLAAEAGIDLSQVDFDSIQLPPGENCGILSDDDDILQEEQLDFDSGFGNIIVVDNLPVVPLGKFEKLEGVIRKIFSQTGVIKEDGLWMP LDPETKKTNGYCFIEYNTPQEAELAKEQTNGYRLDKSHFFIVNMFDDFDKFMRIPDEWAAPEVKPYVPGENLQHWLTDEKARDQFVIRAGTDTEVFWNDT RHLKPDPVYKRAYWTESFVQWSPLGTYLATVHRQGAAVWGGASSFNRLMRYAHPQVKMIDFSPGEKYLVTYSSHEPSNPRDANRVLINIFDVRTGKVRRD FKGSADEFTANGVTDVQWPVFRWGGGKGDNYFAKLGKNMISVYETETFSLIDKKSIKVENIVDFTWSPADPIIALFVPELGGGNQPARVSLVQIPSKQEL RQKNLFSVKDCTMHWQSAGDYLAVQVDRYTKTKKNTYTGFELFRIKERDIPIEVLELENKNNKIIAFGWEPKGHRFAVIHGDGPRPDISFYSMKTAQHSG RVSKLTTLKGKQANALFWSPLGHYIILAGMKGFNGQLEFYNVDELETMATAEHFMATDVVWDPTGRYVATAVTSVHHEMENGFNIWPPSFLSPEKEEEIT KNLKKYSKKYEAEDQDVSLQLSEQDREKRRLLKDEWAQWVSRWNQLHEEEEPERRELRDGEASDEEEVYEAMEVEVEEVLDVSEEVVSFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Lus10016562 [exp]	0	1
AT5G60370			unknown protein		Lus10023343 [exp]	2.0	0.9100
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Lus10040568 [exp]	2.8	0.8923
AT4G32050			neurochondrin family protein (...		Lus10001536 [exp]	5.0	0.8755
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Lus10040584 [exp]	6.0	0.8658
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10014047 [exp]	9.9	0.8891
AT4G02900			ERD (early-responsive to dehyd...		Lus10000660 [exp]	12.6	0.8343
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Lus10013125 [exp]	15.1	0.8836
					Lus10037765 [exp]	26.3	0.8157
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10019220 [exp]	26.9	0.8727
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10033736 [exp]	28.3	0.8687

Compare expression of checked genes

Lus10016562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.