Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34440 126 / 4e-37 MADS AGL29 AGAMOUS-like 29 (.1) AT3G66656 109 / 3e-30 MADS AGL91 AGAMOUS-like 91 (.1) AT5G60440 101 / 5e-26 MADS AGL62 AGAMOUS-like 62 (.1) AT2G24840 94 / 2e-23 MADS DIA, AGL61 DIANA, AGAMOUS-like 61 (.1) AT4G36590 92 / 8e-23 MADS MADS-box transcription factor family protein (.1) AT1G47760 89 / 3e-22 MADS AGL102 AGAMOUS-like 102 (.1) AT1G65360 89 / 5e-22 MADS AGL23 AGAMOUS-like 23 (.1) AT1G01530 88 / 2e-21 MADS AGL28 AGAMOUS-like 28 (.1) AT4G37940 79 / 5e-18 MADS AGL21 AGAMOUS-like 21 (.1) AT2G45660 78 / 6e-18 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040832 [exp] 254 / 2e-87 AT2G34440 135 / 1e-40 AGAMOUS-like 29 (.1) Lus10011787 [exp] 181 / 4e-58 AT2G34440 133 / 1e-39 AGAMOUS-like 29 (.1) Lus10020511 [exp] 89 / 1e-21 AT5G60440 162 / 9e-49 AGAMOUS-like 62 (.1) Lus10030824 [exp] 87 / 1e-21 AT2G24840 124 / 4e-35 DIANA, AGAMOUS-like 61 (.1) Lus10030663 [exp] 86 / 6e-21 AT2G24840 122 / 2e-34 DIANA, AGAMOUS-like 61 (.1) Lus10012449 [exp] 87 / 9e-21 AT5G60440 157 / 4e-47 AGAMOUS-like 62 (.1) Lus10015271 [exp] 85 / 2e-20 AT2G24840 114 / 6e-31 DIANA, AGAMOUS-like 61 (.1) Lus10035029 [exp] 81 / 6e-20 AT5G10140 89 / 7e-24 FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10003123 [exp] 79 / 1e-19 AT5G10140 87 / 1e-23 FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G131100 [exp] 125 / 1e-36 AT2G34440 137 / 2e-41 AGAMOUS-like 29 (.1) Potri.007G113800 [exp] 101 / 1e-26 AT5G60440 191 / 4e-60 AGAMOUS-like 62 (.1) Potri.009G084200 [exp] 97 / 4e-25 AT5G60440 211 / 2e-68 AGAMOUS-like 62 (.1) Potri.017G047300 [exp] 98 / 5e-25 AT5G60440 185 / 2e-57 AGAMOUS-like 62 (.1) Potri.009G084100 [exp] 93 / 2e-23 AT5G60440 163 / 2e-49 AGAMOUS-like 62 (.1) Potri.001G251400 [exp] 92 / 3e-23 AT5G60440 112 / 3e-30 AGAMOUS-like 62 (.1) Potri.009G045900 [exp] 92 / 4e-23 AT3G04100 121 / 2e-34 AGAMOUS-like 57 (.1) Potri.017G040700 [exp] 91 / 6e-23 AT5G60440 122 / 5e-34 AGAMOUS-like 62 (.1) Potri.004G130900 [exp] 88 / 7e-22 AT3G04100 140 / 5e-42 AGAMOUS-like 57 (.1) Potri.008G041500 [exp] 88 / 2e-21 AT5G60440 147 / 4e-43 AGAMOUS-like 62 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10016563 pacid=23144900 polypeptide=Lus10016563 locus=Lus10016563.g ID=Lus10016563.BGIv1.0 annot-version=v1.0 ATGGGGAGGAGGAAGATTGAAATGGAGATGGTGAAGGACAGTAGCAGTCTACAAGTTACTTTTTCCAAGCGTCGCACTGGCCTTTTCAAAAAGGCACATG AATTAGCAACCCTTTGTGCTGTTAAGGTTGCTCTTTTGATATTCTCACCTGGTGGCAAACCTTTCTCTTTCGGGAGTCCTGATTTTGATGACGTTACTGA GAAATTTTTAACTCAGGACGAGAATTCAGACGAGGATGCTTATGATATTGATCATAATAATCAGGCTGGGATTGCGACACAAAACAAGAATAGGAGATTG GACATGCTCCAACATCAGATTGAGCTTGAAAAGAAGAAAATGAGTGACATGAAGAAGGATGGCACAAAATCTAAGCTTCTGAAGTCACTGAAAAAAATGA AACTCAATGAGCTTGTTAATGTGAAAAACAAGTCGACGAGGCTCCAAAAGGAACTAGCAGGACGAACTATGGAGATAGAGGCTTCAACGACGCTCATGCA CTTGTCAGAAAAAAAATCTACAGCGACAAATGAGAATTATGAATCATCTTCTTCTAGTTCTACCAATTGA
AA sequence Show only first row Show all	>Lus10016563 pacid=23144900 polypeptide=Lus10016563 locus=Lus10016563.g ID=Lus10016563.BGIv1.0 annot-version=v1.0 MGRRKIEMEMVKDSSSLQVTFSKRRTGLFKKAHELATLCAVKVALLIFSPGGKPFSFGSPDFDDVTEKFLTQDENSDEDAYDIDHNNQAGIATQNKNRRL DMLQHQIELEKKKMSDMKKDGTKSKLLKSLKKMKLNELVNVKNKSTRLQKELAGRTMEIEASTTLMHLSEKKSTATNENYESSSSSSTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34440	MADS	AGL29	AGAMOUS-like 29 (.1)		Lus10016563 [exp]	0	1
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10038912 [exp]	6.9	0.7595
AT5G45840			Leucine-rich repeat protein ki...		Lus10015277 [exp]	8.2	0.7988
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10031548 [exp]	12.6	0.7813
AT1G17930			Aminotransferase-like, plant m...		Lus10004818 [exp]	13.4	0.7021
AT3G47570			Leucine-rich repeat protein ki...		Lus10030587 [exp]	16.1	0.6771
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10030097 [exp]	20.0	0.7554
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030409 [exp]	20.4	0.7413
AT5G13660			unknown protein		Lus10005963 [exp]	22.3	0.7413
					Lus10006164 [exp]	24.1	0.7413
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10033678 [exp]	25.4	0.7340

Compare expression of checked genes

Lus10016563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.