Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18620 50 / 2e-06 DHHC-type zinc finger family protein (.1) AT2G14255 48 / 8e-06 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT2G33640 47 / 2e-05 DHHC-type zinc finger family protein (.1) AT4G24630 47 / 2e-05 DHHC-type zinc finger family protein (.1) AT3G22180 47 / 2e-05 DHHC-type zinc finger family protein (.1) AT4G22750 46 / 2e-05 DHHC-type zinc finger family protein (.1.2) AT4G22753 46 / 3e-05 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT5G04270 45 / 3e-05 DHHC-type zinc finger family protein (.1) AT3G56920 45 / 4e-05 DHHC-type zinc finger family protein (.1) AT4G01730 45 / 5e-05 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040833 [exp] 321 / 1e-108 AT2G14255 72 / 1e-13 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10013426 [exp] 50 / 2e-06 AT3G18620 422 / 2e-148 DHHC-type zinc finger family protein (.1) Lus10027339 [exp] 50 / 2e-06 AT4G15080 822 / 0.0 DHHC-type zinc finger family protein (.1) Lus10039043 [exp] 50 / 2e-06 AT4G15080 830 / 0.0 DHHC-type zinc finger family protein (.1) Lus10037133 [exp] 49 / 6e-06 AT1G69420 684 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10036798 [exp] 49 / 7e-06 AT1G69420 766 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10038029 [exp] 48 / 9e-06 AT4G01730 515 / 4e-180 DHHC-type zinc finger family protein (.1) Lus10025157 [exp] 48 / 1e-05 AT2G33640 392 / 2e-130 DHHC-type zinc finger family protein (.1) Lus10012455 [exp] 47 / 2e-05 AT2G14255 597 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G029800 [exp] 219 / 5e-69 AT2G14255 62 / 2e-10 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.002G186800 [exp] 54 / 1e-07 AT4G01730 520 / 0.0 DHHC-type zinc finger family protein (.1) Potri.014G112000 [exp] 53 / 1e-07 AT4G01730 526 / 0.0 DHHC-type zinc finger family protein (.1) Potri.006G020800 [exp] 53 / 2e-07 AT4G15080 786 / 0.0 DHHC-type zinc finger family protein (.1) Potri.016G018400 [exp] 52 / 5e-07 AT4G15080 800 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G006900 [exp] 49 / 4e-06 AT2G33640 553 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G254366 [exp] 47 / 6e-06 AT2G33640 395 / 1e-135 DHHC-type zinc finger family protein (.1) Potri.001G287000 [exp] 48 / 8e-06 AT2G14255 671 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.016G025200 [exp] 47 / 1e-05 AT5G05070 468 / 1e-164 DHHC-type zinc finger family protein (.1) Potri.007G070600 [exp] 47 / 1e-05 AT3G18620 399 / 3e-139 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10016564 pacid=23144853 polypeptide=Lus10016564 locus=Lus10016564.g ID=Lus10016564.BGIv1.0 annot-version=v1.0 ATGGAGGAGTCTGGGAATCGACGGCGACGTTCAGGCTCCAACTGGACTTATTTTGACCGGCGAACGGAGGAGGAAGAAATGCCGCGTCTGAATGATCGGA GGGAAAAGCTCCGGCGATCTCCGTTTCAGTTAGCTGGGCGATCCACGATTTCGTTCATCTTCGTCTTCATCACTCAGTTCTCCCTCTCTCTAGTCCCTCG GTTCTTCCCAGCTTCCTTACTTATTCTCCAATTTCTGCTCTCGGTGGTAGTCCTGCTGCTGGTGATTGGTTTTGGGAGATGGTGTAGGCTGCTTATCGGC GTCTCCGCTTCGGCTCCAGCTCTGGTTGTCTTCAATACGCTCTTCGTTTGGGGAGTTTACTTCGTCTTTGTTCGACCTGCTATCTGGCTTTTTGTTGATG TTATTTTCAACGGAGAGATGGTTTTGCTTTTTCTTGGTTTGTACAGAATTGTGTCAAGTGATCCAGGTTTCGTGACAAACAAATTTGCAGGGACCGATGA GCTCGTCGAAACTGAAACATGTACGAGAGAATTTGGTGATCATGTTAAGGGTGCTATACTGTCAAATAGGGTAAGATACTGTAAGAGCTGCGAGGCATAC GTTAAAGGTTTTGACCACCATTGTCCTGCTTTTGGGAACTGCATAGGATACAAGAATCATGTCCTCTTCATGCTTCTTCTTGTTGGATTTCTTGCAACTG AAACTTCCTACTTAGTATGCTGCTTTAAGGGTAAGCATTATCTATTTCCAAGGGGAAAGCACAACTGTGATCCGGTTCAGAAACCCATACGATATGGGCA TTGTTGCAAATCTGAAGGAGTTCCTCGCGGCGGGCATTTCACAACATTGCTAGTTTTCTACCTCCTAGCATTCCTCCCACAAATCGAGCATGCTCAACAA CGTGAATGGGTAGGAGATGCCCGTGGGATGATCTCTCGTCCAAAAATTTCCTGGTTGAGGACGATGATCAACAATATCCTAATTCGGGTTCCATCTGTTG ATGACATTTTGTGGAGGACTACTCGAGTAAATATTAAACTTCATAAACAAGAACCCTTGAAGTTTGTGATTGTATATAGTTTCACAAATCTGCAGCAAGT GTTTTGA
AA sequence Show only first row Show all	>Lus10016564 pacid=23144853 polypeptide=Lus10016564 locus=Lus10016564.g ID=Lus10016564.BGIv1.0 annot-version=v1.0 MEESGNRRRRSGSNWTYFDRRTEEEEMPRLNDRREKLRRSPFQLAGRSTISFIFVFITQFSLSLVPRFFPASLLILQFLLSVVVLLLVIGFGRWCRLLIG VSASAPALVVFNTLFVWGVYFVFVRPAIWLFVDVIFNGEMVLLFLGLYRIVSSDPGFVTNKFAGTDELVETETCTREFGDHVKGAILSNRVRYCKSCEAY VKGFDHHCPAFGNCIGYKNHVLFMLLLVGFLATETSYLVCCFKGKHYLFPRGKHNCDPVQKPIRYGHCCKSEGVPRGGHFTTLLVFYLLAFLPQIEHAQQ REWVGDARGMISRPKISWLRTMINNILIRVPSVDDILWRTTRVNIKLHKQEPLKFVIVYSFTNLQQVF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18620			DHHC-type zinc finger family p...		Lus10016564 [exp]	0	1
AT4G36195			Serine carboxypeptidase S28 fa...		Lus10028365 [exp]	5.8	0.8703
AT2G27830			unknown protein		Lus10009391 [exp]	9.2	0.8048
AT2G23790			Protein of unknown function (D...		Lus10019663 [exp]	9.2	0.8656
AT4G24230		ACBP3	acyl-CoA-binding domain 3 (.1....		Lus10007764 [exp]	12.3	0.8582
AT3G56310			Melibiase family protein (.1.2...		Lus10029046 [exp]	13.6	0.8668
AT4G17830			Peptidase M20/M25/M40 family p...		Lus10040090 [exp]	19.7	0.8564
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10001194 [exp]	19.9	0.8643
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	26.6	0.8629
AT1G22930			T-complex protein 11 (.1.2)		Lus10015468 [exp]	27.1	0.8457
AT4G15563			unknown protein		Lus10012807 [exp]	33.3	0.8563

Compare expression of checked genes

Lus10016564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.