Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46510 863 / 0 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G28830 755 / 0 AtPUB12 PLANT U-BOX 12 (.1) AT3G54850 633 / 0 ATPUB14 plant U-box 14 (.1) AT1G23030 462 / 3e-155 PUB11 ARM repeat superfamily protein (.1) AT1G71020 458 / 1e-153 ARM repeat superfamily protein (.1.2) AT5G42340 447 / 6e-149 PUB15 Plant U-Box 15 (.1) AT1G29340 277 / 4e-83 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT3G07360 265 / 4e-81 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT2G23140 262 / 1e-76 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G01830 245 / 1e-71 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040834 [exp] 1282 / 0 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10037970 [exp] 675 / 0 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10012260 [exp] 485 / 2e-163 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10016016 [exp] 476 / 3e-160 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10038699 [exp] 453 / 8e-153 AT3G54850 599 / 0.0 plant U-box 14 (.1) Lus10043471 [exp] 454 / 6e-152 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 430 / 2e-132 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10007511 [exp] 368 / 7e-118 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 357 / 3e-114 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G029600 [exp] 1025 / 0 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 999 / 0 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 692 / 0 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G226500 [exp] 676 / 0 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.002G009900 [exp] 512 / 3e-174 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.010G113900 [exp] 465 / 4e-156 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.004G205000 [exp] 454 / 8e-152 AT5G42340 654 / 0.0 Plant U-Box 15 (.1) Potri.008G128600 [exp] 445 / 2e-148 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.009G165900 [exp] 443 / 2e-147 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.010G185900 [exp] 347 / 4e-110 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10016565 pacid=23144894 polypeptide=Lus10016565 locus=Lus10016565.g ID=Lus10016565.BGIv1.0 annot-version=v1.0 ATGGAGGGAGAACAGAAGGAGAAGAAGAAGACGACCAGCAAGGAAGAGGCGGCACCAAGGCCGCTGATTCGGACCCTGATCGATACGGTGAACGACATAG CTTCGATCTCTGACTACAGGTCCACGGTCAAGAAGCAGTACTGCAACTTGGCGAGGAGGTTGAAGCTCTTGACCCCATTGTTCGAGGAAATCCGGGAGTG CAAGGATGCGATTCCTGAGGAGACCGTTGATGCTCTCGTTTCTTTGAAAATCGCTCTCGATTCCGCTAAAGAGCTGCTCAGATTCGGCTGCGATGCCAGC AAGATTTACCTGGTCTTGGAGAGGGAGGACATAGTGGTTAAATACCATGAGGTGACGGATCAGTTAGAACAAGCTTTAGGTGGAATTTCTTTTGAAAATC TGGACATATCGGATGAAGTTAAAGAACAGGTCGAGCTTGTCCTTGCCCAGTTCAAGAGAGCGAAAGGGAGATTCGATTCTCCAGATTTGGGGCTCTATTT AGATCTCTTTAAGCTCTATGGCAACGATAGTGATCCCACGCCAGATCCTGATGTTCTAAGAAGGTTGTCCGAGAAGTTACAACTGACTGGGATCGACGAG CTTACACAAGAGTCACTTGCTTTGCATGAGATGGTTTCTGCTAGCGGTGGAGATCCTGGGGAGAACATAGAGAAGATGTCAATGCTGCTTAAGAAGATTA AGGAGTTCGTTCAAACTGAAAATCCCGACTTGGATTCTTCTACCAGGGGAAAAGGTGTTCCTCCTAGTGGCAGTGGGCAAGCTTCCATGGACGGGAATCA CAAATCCCCGGTTATACCAGATGATTTCCGCTGTCCAATCTCTCTAGAGTTGATGAAGGATCCTGTCATTGTTTCAACGGGGCAGACCTACGAACGAGCC TGCATCGAGAAATGGCTTGAACAAGGGCACGTAACATGTCCGAAAACGCAACAATCTCTCAGCAGCAACACACTCACCCCCAACTACGTACTACGCAGCC TAATAGCCCAATGGTGCGAATCCAACGGCATTGAACCGCCAAAACGACCCAGCAGTTCAAGATCCAGCAAAGCAACAAGCGCTTGCACACCTGCCGAGCG TACCAAAATCGAACTACTTCTCCACAAGCTCACATCCGGAACTCCAGAAGACCGCCGATCCGCCGCAGGAGAAATCCGCCTCCTCGCAAAACGAAATGCC GATAATCGAGTCGCCATTGCCGAAGCTGGAGCAGTCCCTCTCCTCGTCGGCCTCCTCTCAACTCCCGATTCTCGAACTCAAGAACACGCCGTTACGGCTC TGCTTAATCTCTCCATATGTGAGGACAACAAAGGCAGGATCATATCGGCCGGAGCGGTCCCAGGGATCGTAAATGTGCTGAAGAAAGGTAGCATGGAAGC TCGGGAAAACGCGGCGGCTACACTCTTCAGCCTCTCCGTCGTCGACGAAAACAAGGTCACGATCGGGTCCTCCGGTGCGATTCCTCCTCTTGTGACTCTA CTGAGTGAAGGCACACAGAGAGGGAAAAAAGATGCTGCAACTGCGCTGTTCAACTTGTGCATTTATCAAGGGAATAAAGGGAAGGCGATTAGAGCAGGAG TTGTGCCGACGTTAATGATTCTCTTAACGGAGCATGGTGGCAGCATGGTTGATGAAGCTCTGGCTATATTAGCGATATTGGCTAGCCATACTGAAGGGAG AGCGGCGATTGGAGCTGCGGAAGCCGTTCCGGTTCTGGTTGAAGTTATCGGGAGCGGGTCGCCGAGGAACCGAGAGAATGCAGCTGCGGTTTTGGTGCAT CTTTGTTCTGGAGATCACAAGTATATGGTAGAGGCCCAGGAGCTTGGAGTTATGACTCCGTTGTTGGATTTGGCACAGAACGGTACAGAACGAGGGAAGC GGAAAGCTCAACAGCTGCTTGACCGGATAAGTCGGTACATCGAGCAGCAGAAGCTTGCTCAACAAGCCGAATCCGACTCTCCGAATCCACCAGCGGAAGC CACAACGGATCCTGCATGCTGA
AA sequence Show only first row Show all	>Lus10016565 pacid=23144894 polypeptide=Lus10016565 locus=Lus10016565.g ID=Lus10016565.BGIv1.0 annot-version=v1.0 MEGEQKEKKKTTSKEEAAPRPLIRTLIDTVNDIASISDYRSTVKKQYCNLARRLKLLTPLFEEIRECKDAIPEETVDALVSLKIALDSAKELLRFGCDAS KIYLVLEREDIVVKYHEVTDQLEQALGGISFENLDISDEVKEQVELVLAQFKRAKGRFDSPDLGLYLDLFKLYGNDSDPTPDPDVLRRLSEKLQLTGIDE LTQESLALHEMVSASGGDPGENIEKMSMLLKKIKEFVQTENPDLDSSTRGKGVPPSGSGQASMDGNHKSPVIPDDFRCPISLELMKDPVIVSTGQTYERA CIEKWLEQGHVTCPKTQQSLSSNTLTPNYVLRSLIAQWCESNGIEPPKRPSSSRSSKATSACTPAERTKIELLLHKLTSGTPEDRRSAAGEIRLLAKRNA DNRVAIAEAGAVPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGRIISAGAVPGIVNVLKKGSMEARENAAATLFSLSVVDENKVTIGSSGAIPPLVTL LSEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVVPTLMILLTEHGGSMVDEALAILAILASHTEGRAAIGAAEAVPVLVEVIGSGSPRNRENAAAVLVH LCSGDHKYMVEAQELGVMTPLLDLAQNGTERGKRKAQQLLDRISRYIEQQKLAQQAESDSPNPPAEATTDPAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10016565 [exp]	0	1
AT2G39130			Transmembrane amino acid trans...		Lus10037974 [exp]	6.0	0.7147
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10034432 [exp]	7.7	0.7015
AT1G19025			DNA repair metallo-beta-lactam...		Lus10013876 [exp]	8.9	0.6661
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10015238 [exp]	14.0	0.7440
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10024512 [exp]	15.2	0.7351
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10018439 [exp]	20.1	0.7241
AT5G06740			Concanavalin A-like lectin pro...		Lus10028699 [exp]	25.9	0.6655
AT5G61390			Polynucleotidyl transferase, r...		Lus10015719 [exp]	38.5	0.6507
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10012631 [exp]	42.7	0.6797
AT3G11240		ATATE2, ATE2	arginine-tRNA protein transfer...		Lus10040189 [exp]	48.0	0.7035

Compare expression of checked genes

Lus10016565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.