Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37590 152 / 2e-43 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT5G02460 144 / 2e-39 DOF AtDof5. 1 Dof-type zinc finger DNA-binding family protein (.1) AT2G28810 137 / 1e-37 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2) AT3G55370 135 / 4e-37 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT1G07640 132 / 2e-36 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT5G60200 116 / 2e-30 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT1G51700 111 / 2e-29 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT5G60850 113 / 6e-29 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT3G21270 110 / 6e-29 DOF ADOF2, AtDof3. 1 DOF zinc finger protein 2 (.1) AT5G65590 112 / 2e-28 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040836 [exp] 214 / 4e-69 AT2G37590 142 / 2e-41 DNA binding with one finger 2.4 (.1) Lus10025340 [exp] 162 / 3e-46 AT2G37590 182 / 4e-54 DNA binding with one finger 2.4 (.1) Lus10029458 [exp] 148 / 2e-41 AT3G55370 161 / 6e-47 OBF-binding protein 3 (.1.2.3) Lus10005956 [exp] 146 / 7e-41 AT3G55370 174 / 8e-52 OBF-binding protein 3 (.1.2.3) Lus10040305 [exp] 125 / 2e-32 AT3G55370 147 / 1e-40 OBF-binding protein 3 (.1.2.3) Lus10002381 [exp] 116 / 1e-29 AT5G62940 166 / 4e-48 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10042114 [exp] 109 / 2e-29 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10025707 [exp] 113 / 2e-28 AT5G65590 192 / 7e-59 Dof-type zinc finger DNA-binding family protein (.1) Lus10015425 [exp] 112 / 2e-28 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G205400 [exp] 168 / 3e-49 AT2G37590 137 / 7e-38 DNA binding with one finger 2.4 (.1) Potri.001G238400 [exp] 167 / 4e-49 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3) Potri.006G084200 [exp] 161 / 7e-47 AT2G37590 160 / 2e-46 DNA binding with one finger 2.4 (.1) Potri.009G029500 [exp] 153 / 1e-43 AT5G02460 154 / 1e-43 Dof-type zinc finger DNA-binding family protein (.1) Potri.008G055100 [exp] 140 / 8e-39 AT3G55370 146 / 7e-41 OBF-binding protein 3 (.1.2.3) Potri.005G134200 [exp] 119 / 4e-31 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.007G038100 [exp] 119 / 7e-31 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1) Potri.007G058200 [exp] 117 / 4e-30 AT5G65590 192 / 1e-58 Dof-type zinc finger DNA-binding family protein (.1) Potri.005G149100 [exp] 116 / 8e-30 AT5G65590 197 / 1e-60 Dof-type zinc finger DNA-binding family protein (.1) Potri.003G144500 [exp] 114 / 1e-29 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10016566 pacid=23144869 polypeptide=Lus10016566 locus=Lus10016566.g ID=Lus10016566.BGIv1.0 annot-version=v1.0 ATGGTTTTTTCTTCCATTCCAGTCTACTTAGATCCTCCCAACTGGCATCATCATCACCACCAGTCTGTTAACCAATTGGTACAGCATGACCAAGGAGGAG GAGGAGCTTCTGCTTCGTACGAAGCTCCTCCTCCTCGTCCTCCGCATCAGCAGCACCAACTTTCTCCTCTGCCGGCTCAGCAAATGGTGCCACACAGAGG AGGAGGAGGAGGAGTAGGAGCTGCTTCGATCCGGCCTGGCTCGATGGCTGATCAAGCCAGACAGGCGAAAATACCCCAGCCGGAGCCGGGGCTGAAGTGC CCTAGGTGCGAGTCTACCAACACCAAGTTCTGCTACTTCAACAACTACAACCTCACCCAGCCACGTCACTTCTGCAAGACCTGCCGACGCTACTGGACCA AAGGCGGTGCCCTCCGCAACGTTCCCGTGGGAGGCGGCTGCCGTCGCAACAAGAAGAGCTCCGCCGCCAAAGGAAATAAAAACTCCGGCGGAGGTGGTGG CGGTGGAAGCTCAGGTAGTGGAACTTCAACTAGCTCGGCTGCTGCCGGAATGATTCTTCCGTCGGAGATTATGGGGCATTTGCCACATCATCATCAGCTT CCGCCGTTCTTGGCTCATCAATTTGGAGCGGGGGGTAATAATTTAGGGCTGAACTATGGCGGCGGAGGTGGAGGAAGTGGCGGCGGGGCAGAAATGGGGT TGTTTCAGATGGGAGGGAGCAGTAGTAATTCAGGTATGGTGCAGCAGTTTCCTTTCTTCGAGACGGCGGCGGGGAATTTATACGGTAGCTTCCAGAACGA AGGAATGATGAGTGGTGGTGGCGGCGGCGGTACTAGTAACTCAAGCTCTAGGGTTAATGCACAGCTGGCTCAAGTCAAACCTGAGCTCCAAGGAGTCAAC TTGGTGACTCGGCAGCCATTTGCTGACTCGGACAGTGGTAATCAGTACTGGGGAGGACGTGGCGCCGGAAATGCGGGTGCCAGCTGGACTGATCTAACGG GTCTCAACTCACACAACTAG
AA sequence Show only first row Show all	>Lus10016566 pacid=23144869 polypeptide=Lus10016566 locus=Lus10016566.g ID=Lus10016566.BGIv1.0 annot-version=v1.0 MVFSSIPVYLDPPNWHHHHHQSVNQLVQHDQGGGGASASYEAPPPRPPHQQHQLSPLPAQQMVPHRGGGGGVGAASIRPGSMADQARQAKIPQPEPGLKC PRCESTNTKFCYFNNYNLTQPRHFCKTCRRYWTKGGALRNVPVGGGCRRNKKSSAAKGNKNSGGGGGGGSSGSGTSTSSAAAGMILPSEIMGHLPHHHQL PPFLAHQFGAGGNNLGLNYGGGGGGSGGGAEMGLFQMGGSSSNSGMVQQFPFFETAAGNLYGSFQNEGMMSGGGGGGTSNSSSRVNAQLAQVKPELQGVN LVTRQPFADSDSGNQYWGGRGAGNAGASWTDLTGLNSHN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10016566 [exp]	0	1
AT3G25290			Auxin-responsive family protei...		Lus10021553 [exp]	2.4	0.9260
AT1G68430			unknown protein		Lus10003042 [exp]	3.7	0.9161
AT1G62760			Plant invertase/pectin methyle...		Lus10004327 [exp]	4.0	0.8858
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10035783 [exp]	4.5	0.9139
AT3G15680			Ran BP2/NZF zinc finger-like s...		Lus10002896 [exp]	5.0	0.9139
AT1G68430			unknown protein		Lus10034103 [exp]	5.9	0.9122
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Lus10040836 [exp]	5.9	0.8413
AT1G10380			Putative membrane lipoprotein ...		Lus10036687 [exp]	8.1	0.9151
AT5G22870			Late embryogenesis abundant (L...		Lus10041350 [exp]	8.8	0.9132
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10040305 [exp]	9.3	0.8541

Compare expression of checked genes

Lus10016566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.