Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59350 54 / 3e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040839 [exp] 286 / 2e-96 AT5G59350 160 / 2e-47 unknown protein Lus10040302 [exp] 73 / 8e-15 AT5G59350 117 / 3e-31 unknown protein Lus10023421 [exp] 72 / 2e-14 AT5G59350 115 / 2e-30 unknown protein Lus10005456 [exp] 68 / 1e-13 AT5G59350 92 / 7e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G238300 [exp] 129 / 3e-35 AT5G59350 146 / 1e-41 unknown protein Potri.009G029300 [exp] 124 / 2e-33 AT5G59350 161 / 1e-47 unknown protein Potri.008G054400 [exp] 76 / 2e-15 AT5G59350 91 / 8e-21 unknown protein Potri.010G206100 [exp] 75 / 4e-15 AT5G59350 111 / 1e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016568 pacid=23144818 polypeptide=Lus10016568 locus=Lus10016568.g ID=Lus10016568.BGIv1.0 annot-version=v1.0 ATGAAGTCCGCAAGCGGGTTAGTAATCGGGTTGAGCTTAGTGTTCGGGTGCCTCTTCCTAGCTCTCGCAGCCGAGCTCTACTACCTCCTATGGTGGAAGA AGCGAATCGTGAACCGAGAGAGCGAAACCGAAGAAGAAAGCCACACCTCCGGATCTTTAACCAGTAACAACACCGCCGCCAAGGAGTTCCTCCATTTCGT CTGCTGGAAGAAACCCGCCGCTCAACCCGACCCGAACCAACCCGACCCCGATCTAGAACGCGGAGACAGCGACGGGAAGGACAATGACTCGCTGCTGATA AAGTGCGGAGGTGGTGGAGAGGCGGAGGAGAGCGTGGAATCGGAGCTAATGCGGCTGCACAACCTGGCCGGACCGCCGCGGTTCCTGTTCACGATTAAAG AAGAGGAGAAGGAGGATTTGGAATCCGAATGCGACAAGAGGAGCAGGAAAGGCTCCAGGACTCGTAGCTTGAGCGACATTCTAATGGCGGTCGATAATTC AAGTACGACGCCGTTGTTCACCCCTTTAGCGTCCCCTCGCTGCTACACAAATCCCCTGGAGTCCTATAACCGCCAGGGATTCAATTTCAATCCATTGTTC GAATCATCGACGACGGAAGTACTGAGATCCTCCTCCTCGCCGCCGCCGAAGTTCAAGTTCTTGCGAGACGCGGAGGAGAAGCTGCTGAAAAGGCTTCTAG AAGAGTCCGAGAGGAAGCCTCTGTATCCGGCGATGGCGGCGGAAGTCAGAGAAGGGTCGTTCCTAGGGTTTCTGTACGCGAAGAACAATTACAACAACAG AGAGGTTGCAGCGGTTCATCCCTTGCCTCAGGTGATTCCTTTGGCTTCTTCTCCGCCGACGCCATCGGCGATCTCGGAACGTTATTAG
AA sequence Show only first row Show all	>Lus10016568 pacid=23144818 polypeptide=Lus10016568 locus=Lus10016568.g ID=Lus10016568.BGIv1.0 annot-version=v1.0 MKSASGLVIGLSLVFGCLFLALAAELYYLLWWKKRIVNRESETEEESHTSGSLTSNNTAAKEFLHFVCWKKPAAQPDPNQPDPDLERGDSDGKDNDSLLI KCGGGGEAEESVESELMRLHNLAGPPRFLFTIKEEEKEDLESECDKRSRKGSRTRSLSDILMAVDNSSTTPLFTPLASPRCYTNPLESYNRQGFNFNPLF ESSTTEVLRSSSSPPPKFKFLRDAEEKLLKRLLEESERKPLYPAMAAEVREGSFLGFLYAKNNYNNREVAAVHPLPQVIPLASSPPTPSAISERY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59350			unknown protein		Lus10016568 [exp]	0	1
AT1G11655			unknown protein		Lus10020050 [exp]	3.3	0.9646
AT3G52480			unknown protein		Lus10029407 [exp]	4.2	0.9600
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Lus10027837 [exp]	5.6	0.9387
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Lus10036433 [exp]	9.9	0.9628
AT5G37478			TPX2 (targeting protein for Xk...		Lus10020800 [exp]	13.4	0.9578
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10030592 [exp]	14.5	0.9562
AT1G71740			unknown protein		Lus10034266 [exp]	17.9	0.9428
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10035517 [exp]	19.7	0.9570
AT3G51325			RING/U-box superfamily protein...		Lus10040617 [exp]	21.5	0.9485
AT5G63930			Leucine-rich repeat protein ki...		Lus10023680 [exp]	23.5	0.9051

Compare expression of checked genes

Lus10016568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.