Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59340 108 / 5e-28 HD WOX2 WUSCHEL related homeobox 2 (.1) AT5G05770 91 / 1e-22 HD WOX5A, WOX7 WUSCHEL related homeobox 5A, WUSCHEL related homeobox 7 (.1) AT1G46480 93 / 3e-22 HD WOX4 WUSCHEL related homeobox 4 (.1) AT3G11260 91 / 3e-22 HD WOX5B, WOX5 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) AT3G18010 94 / 7e-22 HD WOX1 WUSCHEL related homeobox 1 (.1) AT2G28610 91 / 2e-21 HD PRS1, PRS, WOX3 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) AT2G17950 91 / 4e-21 HD WUS1, PGA6, WUS WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) AT2G01500 87 / 5e-20 HD WOX6, PFS2, HOS9 WUSCHEL RELATED HOMEOBOX 6, PRETTY FEW SEEDS 2, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE 9, Homeodomain-like superfamily protein (.1) AT1G20700 79 / 3e-17 HD ATWOX14, WOX14 WUSCHEL related homeobox 14 (.1) AT4G35550 70 / 8e-14 HD HB-4, WOX13, ATWOX13 WUSCHEL related homeobox 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040840 [exp] 342 / 5e-119 AT5G59340 110 / 7e-29 WUSCHEL related homeobox 2 (.1) Lus10040219 [exp] 91 / 1e-21 AT3G11260 179 / 4e-57 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10024808 [exp] 91 / 2e-21 AT1G46480 195 / 7e-62 WUSCHEL related homeobox 4 (.1) Lus10028271 [exp] 91 / 3e-21 AT3G11260 177 / 4e-56 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10042007 [exp] 91 / 2e-20 AT3G18010 174 / 2e-50 WUSCHEL related homeobox 1 (.1) Lus10018011 [exp] 91 / 2e-20 AT3G18010 164 / 9e-47 WUSCHEL related homeobox 1 (.1) Lus10028457 [exp] 89 / 6e-20 AT2G17950 146 / 3e-41 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Lus10041909 [exp] 89 / 6e-20 AT2G17950 145 / 4e-41 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Lus10038480 [exp] 83 / 7e-19 AT2G28610 130 / 1e-37 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G237900 [exp] 108 / 4e-28 AT5G59340 166 / 2e-50 WUSCHEL related homeobox 2 (.1) Potri.009G029200 [exp] 107 / 6e-28 AT5G59340 171 / 2e-52 WUSCHEL related homeobox 2 (.1) Potri.014G025300 [exp] 96 / 2e-23 AT1G46480 226 / 5e-75 WUSCHEL related homeobox 4 (.1) Potri.002G124100 [exp] 95 / 2e-23 AT1G46480 221 / 1e-72 WUSCHEL related homeobox 4 (.1) Potri.010G192100 [exp] 91 / 3e-22 AT3G11260 159 / 1e-49 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Potri.015G039100 [exp] 91 / 6e-21 AT3G18010 195 / 3e-59 WUSCHEL related homeobox 1 (.1) Potri.012G047700 [exp] 91 / 8e-21 AT3G18010 174 / 8e-51 WUSCHEL related homeobox 1 (.1) Potri.008G065400 [exp] 87 / 1e-20 AT3G11260 176 / 9e-57 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Potri.010G111400 [exp] 89 / 2e-20 AT3G18010 109 / 2e-27 WUSCHEL related homeobox 1 (.1) Potri.005G114700 [exp] 88 / 3e-20 AT2G17950 129 / 1e-35 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10016569 pacid=23144824 polypeptide=Lus10016569 locus=Lus10016569.g ID=Lus10016569.BGIv1.0 annot-version=v1.0 ATGGACACTAGTAACAACAATACAGTACCCGTGAAAGCCAACAAGAACACTACTACTTCAAGAATTCCGGCGAACTTCAGGTGGACACCGACCTCACCGC AGATAAACTTGCTGGAAGGCCTGTACAACCAAGGCCTCAGGACTCCCACACCTGATCAGATCCAGCAGATCGCCGCCAAGCTCAGCACCCACGGCCACAT CGAAGGCAAAAACGTCTTCTACTGGTTCCAGAACCATAAAGCCCGCCAGCGCCAAAAGCAAAAACAGGATGTTATTAATAATCATATTCATCCTAATAAT CATCTCCCGTTCGTTAATCCTCATCATCACTTCCTTCGCAAGCCTCCTCTTCCGCCGCCGCATTCTCCTCACGGCGCTGTTCGCCACGTCCCATCTCCTT CCCCAGGTTATTGTGGGACGTCGTCGTATAGTACGTCATCACAAGCGGATCTAGGGCTGCCACGTCAGTTTCGAGTGGTCCCGGCGGGTGGATTAACCCA ACTTAGGCCCGCTGACAAGATCCTGTGGAGGACAGCGACAGCAGCCGCCCACAGGATCGTCCCCGACACTCTAAATAATAATGACGGCGCAACTAATTAC CATGATTGTGATAACTACCAAGAAACTCTGCCGCTTTTTCCGCTTCACCCCACCGGAGGTTTGCTTGCCAGGTCGTCAACTTCGTCGTCGTCGTCCGATA AGCTGTATGATTATAATCATGTAAGTTCTAGCCCTAGCCCTAGCTATAGCTCGTGCGATACTGGTGTCGACGTTGAAGATGGCGATAGTGGTCGCCGTTG CTTCGACCTCTTCTCTATTGGGAAGGGTCATTTATGTCCCAGTCAAAGATATTGA
AA sequence Show only first row Show all	>Lus10016569 pacid=23144824 polypeptide=Lus10016569 locus=Lus10016569.g ID=Lus10016569.BGIv1.0 annot-version=v1.0 MDTSNNNTVPVKANKNTTTSRIPANFRWTPTSPQINLLEGLYNQGLRTPTPDQIQQIAAKLSTHGHIEGKNVFYWFQNHKARQRQKQKQDVINNHIHPNN HLPFVNPHHHFLRKPPLPPPHSPHGAVRHVPSPSPGYCGTSSYSTSSQADLGLPRQFRVVPAGGLTQLRPADKILWRTATAAAHRIVPDTLNNNDGATNY HDCDNYQETLPLFPLHPTGGLLARSSTSSSSSDKLYDYNHVSSSPSPSYSSCDTGVDVEDGDSGRRCFDLFSIGKGHLCPSQRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59340	HD	WOX2	WUSCHEL related homeobox 2 (.1...		Lus10016569 [exp]	0	1
AT1G15190			Fasciclin-like arabinogalactan...		Lus10003958 [exp]	2.0	0.9059
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10008960 [exp]	2.8	0.8593
					Lus10030648 [exp]	3.6	0.8481
AT3G53630			unknown protein		Lus10025312 [exp]	4.8	0.9136
AT3G19910			RING/U-box superfamily protein...		Lus10025691 [exp]	5.5	0.8556
AT1G04910			O-fucosyltransferase family pr...		Lus10030093 [exp]	7.9	0.8584
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10037560 [exp]	9.5	0.8821
AT3G18570			Oleosin family protein (.1)		Lus10017992 [exp]	12.7	0.8628
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037662 [exp]	21.9	0.8497
AT3G16150		ASPGB1	asparaginase B1, N-terminal nu...		Lus10024795 [exp]	26.5	0.8285

Compare expression of checked genes

Lus10016569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.