Plant FIBer expression Database

Lus10016570 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G28800 539 / 0 ABL3, ALB3 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4)
AT1G24490 366 / 7e-123 ALB4, ARTEMIS ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040841
[exp]
721 / 0 AT2G28800 586 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4)
Lus10006454
[exp]
361 / 6e-121 AT1G24490 516 / 0.0 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2)
Lus10011398
[exp]
219 / 3e-66 AT1G24490 363 / 4e-121 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G237800
[exp]
618 / 0 AT2G28800 566 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4)
Potri.009G029100
[exp]
596 / 0 AT2G28800 545 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4)
Potri.010G051900
[exp]
402 / 2e-136 AT1G24490 501 / 3e-174 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2)
Potri.008G182000
[exp]
385 / 3e-130 AT1G24490 503 / 3e-175 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0376 Oxa1 PF02096 60KD_IMP 60Kd inner membrane protein
Representative CDS sequence
>Lus10016570 pacid=23144899 polypeptide=Lus10016570 locus=Lus10016570.g ID=Lus10016570.BGIv1.0 annot-version=v1.0
ATGGCGAAAACCCTAATTTCATACCCGACCTTCCTCGGGACGCCTCTTCCCGCCCGCTCTCGCCATGGACTCCTGCACACGCTCCCCAGCCGCCGGCTCA
TCTCAACTACTGTGAAGATGAGCTTACAGGACATCATTCCTCCGGTTCATCTCCCTGTTACTACCTCGATTGACTTCAGTTCAATTGTTAGTAGAGCTGA
GAGCGCTCTGTACACGCTTGCCGATGCTGCGGTTGCAGTTGATTCCGCGTCTGGTGGTGCTGCTTCGAGCTCTGGCGACGGTGCCGTTCAGAAGAGCGGC
GGTTGGTTCGGATTTATCTCCGATGCTATGGAGTTCGTGCTCAAGATATTGGAGGACGGGCTTTCGGCTGTTCATATACCTTATGCATATGGATTTTCCA
TTATATTGTTGACTGTTCTTGTGGAGTCAACGTTAGCAATGCAAAACCTTCAACCAAAGATCAAAGCGATCCAGCAAAGATATGCCGGGAATCAGGAAAG
AATACAACTCGAAACATCACGTTTGTATAGGCAAGCTGGGGTTAATCCATTAGCAGGTTGTCTTCCTACTTTGGCCACAATCCCAGTGTGGATAGGGCTG
TATCAAGCTCTTTCCAATGTCGCAAACGAGGGATTGTTGACAGAAGGGTTCTTTTGGATTCCCTCTTTGGGTGGACCAACTTCAATCGCAGCTAGACAAA
GTGGATCTGGAACTTCATGGCTTTTCCCATTTGTGGATGGCCATCCGCCCTTGGGCTGGGGAGATACTGCCGCATACTTGGTGTTGCCGGTATTGCTTAT
AGTTTCTCAGTATGTCTCTATGGAGCTCATGAAGCCTCCCCAGACTGATGATCCCACCCAAAAGAATACCCTTCTGATCTTCAAGTTTCTTCCTCTGATG
ATCGGCTATTTTTCGTTGTCTGTACCATCAGGCTTAACGATCTATTGGTTCACAAACAATGTTCTTAGCACAGCCCAACAGGTATGGTTACGCCGATTGG
GTGGTGCAAAACCAGTTGTCAATGAGGATGCAAGCGGAATCATCACAGCAGGACGTGCAAAACGATCATTTTCACAGCCAGGACAGCCTGGTGAAAGGGT
AAAGCAGTTTAGGGATGAGGAGAAGAAGAAGAAGTTTAGCAAGGCCCTACCATTAGATGATGCGCAATCTCTGGACTCTGAATCGGGTTCTGAGGAGGAC
TCGGATGATGAAACAAAGGACAAGGGTGAGGAGGTGCTAGAAGAAGCATATGCTTCCAGAGTAGGTAAACAACTACCTGATGTTTCACAACCAAAGAGAA
GCAAACGATCAAGGAGGAAGCGGACTGCATAA
AA sequence
>Lus10016570 pacid=23144899 polypeptide=Lus10016570 locus=Lus10016570.g ID=Lus10016570.BGIv1.0 annot-version=v1.0
MAKTLISYPTFLGTPLPARSRHGLLHTLPSRRLISTTVKMSLQDIIPPVHLPVTTSIDFSSIVSRAESALYTLADAAVAVDSASGGAASSSGDGAVQKSG
GWFGFISDAMEFVLKILEDGLSAVHIPYAYGFSIILLTVLVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGL
YQALSNVANEGLLTEGFFWIPSLGGPTSIAARQSGSGTSWLFPFVDGHPPLGWGDTAAYLVLPVLLIVSQYVSMELMKPPQTDDPTQKNTLLIFKFLPLM
IGYFSLSVPSGLTIYWFTNNVLSTAQQVWLRRLGGAKPVVNEDASGIITAGRAKRSFSQPGQPGERVKQFRDEEKKKKFSKALPLDDAQSLDSESGSEED
SDDETKDKGEEVLEEAYASRVGKQLPDVSQPKRSKRSRRKRTA

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G28800 ABL3, ALB3 ALBINO 3, 63 kDa inner membran... Lus10016570
[exp]
0 1
AT3G24430 HCF101 HIGH-CHLOROPHYLL-FLUORESCENCE ... Lus10043252
[exp]
1.0 0.9576
AT5G22800 EMB86, EMB263, ... EMBRYO DEFECTIVE 86, EMBRYO DE... Lus10022640
[exp]
2.8 0.9557
AT5G22800 EMB86, EMB263, ... EMBRYO DEFECTIVE 86, EMBRYO DE... Lus10003337
[exp]
3.5 0.9534
AT2G21960 unknown protein Lus10005779
[exp]
4.9 0.9486
AT4G01150 unknown protein Lus10010132
[exp]
4.9 0.9533
AT4G37930 SHMT1, STM, SHM... SERINE HYDROXYMETHYLTRANSFERAS... Lus10029559
[exp]
7.1 0.9527
AT1G78995 unknown protein Lus10033323
[exp]
7.3 0.9511
AT2G34860 EDA3 embryo sac development arrest ... Lus10024221
[exp]
9.9 0.9391
AT4G27800 TAP38, PPH1 PROTEIN PHOSPHATASE 1, thylako... Lus10022384
[exp]
11.0 0.9232
AT5G21430 NdhU, CRRL NADH dehydrogenase-like comple... Lus10027616
[exp]
11.0 0.9374

Lus10016570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.