Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28790 316 / 1e-109 Pathogenesis-related thaumatin superfamily protein (.1) AT5G40020 186 / 2e-58 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75800 174 / 1e-52 Pathogenesis-related thaumatin superfamily protein (.1) AT2G17860 170 / 2e-52 Pathogenesis-related thaumatin superfamily protein (.1) AT4G36010 171 / 3e-52 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G18250 168 / 1e-51 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G77700 171 / 2e-51 Pathogenesis-related thaumatin superfamily protein (.1) AT4G24180 167 / 5e-51 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT1G73620 167 / 1e-50 Pathogenesis-related thaumatin superfamily protein (.1) AT5G24620 170 / 2e-50 Pathogenesis-related thaumatin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040843 [exp] 454 / 4e-164 AT2G28790 322 / 6e-112 Pathogenesis-related thaumatin superfamily protein (.1) Lus10005453 [exp] 346 / 3e-121 AT2G28790 333 / 1e-116 Pathogenesis-related thaumatin superfamily protein (.1) Lus10004954 [exp] 342 / 1e-119 AT2G28790 330 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028448 [exp] 184 / 3e-57 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 184 / 7e-57 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10009058 [exp] 176 / 2e-54 AT1G73620 376 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1) Lus10008304 [exp] 170 / 6e-52 AT5G40020 328 / 4e-114 Pathogenesis-related thaumatin superfamily protein (.1) Lus10025055 [exp] 168 / 4e-51 AT4G38660 359 / 6e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028447 [exp] 169 / 7e-51 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G028800 [exp] 352 / 8e-124 AT2G28790 370 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G237600 [exp] 341 / 1e-119 AT2G28790 350 / 4e-123 Pathogenesis-related thaumatin superfamily protein (.1) Potri.017G075500 [exp] 183 / 3e-57 AT5G40020 355 / 1e-124 Pathogenesis-related thaumatin superfamily protein (.1) Potri.004G173200 [exp] 182 / 5e-56 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.009G132500 [exp] 180 / 4e-55 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.012G047800 [exp] 175 / 3e-54 AT1G73620 379 / 3e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112700 [exp] 175 / 1e-53 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.015G039200 [exp] 172 / 4e-53 AT1G73620 352 / 1e-123 Pathogenesis-related thaumatin superfamily protein (.1) Potri.002G020500 [exp] 168 / 1e-50 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G241000 [exp] 168 / 1e-50 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10016572 pacid=23144821 polypeptide=Lus10016572 locus=Lus10016572.g ID=Lus10016572.BGIv1.0 annot-version=v1.0 ATGTCCTCTCACCGCCACCCATACGCCGCCGTTCCACTCCTCCTCCTCCTCCTCCTCCTAATCTCCCCCACCACATCCACCCCACCACCACTAACCCTAA CCTTAGTCAACAACTGCCCATTCCCAGTCTACCCAGCCATCCAACCCTCCGCCGGCTTCCCCATCCTCCAAAACGGCGGCTTCCCTCTCCAACCCTTAAC CCACCGCTCCTTCCCTGGCCCCACCTCCCTCTGGTCCGGCCGAATCTGGGCCCGGACCGGCTGCACCCAAACCGGCTCCACCTTTTGCTGCACCACTGGA GACTGCTCCAACCGCCTCGAATGCAACGGCCTCGGTGGGGCCACACCCGCCACCCTCGTCCAGCTCACCCTCCACCACGGCGACAACAACAATGACTTCT CTTCGTACGGCGTGTCCTTGGTCGACGGGTTCAACGTCCCGATGACCGTGACCCCACACGAGGGAAGGGGAACCTGTCCCGTTGTGGGGTGCACGGCTAA CTTGTTGGAGAGCTGCCCGGACCGGTTGAAGGTCTGGGCGGGCGGTTCGGTTGTGGGTTGTAAGAGTGGATGTGAGGCGTTCGGGACGGACGAGCTTTGC TGTAGGAATGGGTACAACAGTCCGGTGACGTGTAAAGGTTCAAGCTTTTCGGAGTTTTTTAAGCGCGCGTGTCCTGCCACGTTTACATACGCGCATGACA CGCCGTCGCTCATGCACGACTGTTCTTCGCCGCGTGAGCTTAAAGTCATCTTCTGTCACTGA
AA sequence Show only first row Show all	>Lus10016572 pacid=23144821 polypeptide=Lus10016572 locus=Lus10016572.g ID=Lus10016572.BGIv1.0 annot-version=v1.0 MSSHRHPYAAVPLLLLLLLLISPTTSTPPPLTLTLVNNCPFPVYPAIQPSAGFPILQNGGFPLQPLTHRSFPGPTSLWSGRIWARTGCTQTGSTFCCTTG DCSNRLECNGLGGATPATLVQLTLHHGDNNNDFSSYGVSLVDGFNVPMTVTPHEGRGTCPVVGCTANLLESCPDRLKVWAGGSVVGCKSGCEAFGTDELC CRNGYNSPVTCKGSSFSEFFKRACPATFTYAHDTPSLMHDCSSPRELKVIFCH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28790			Pathogenesis-related thaumatin...		Lus10016572 [exp]	0	1
AT1G64700			unknown protein		Lus10001663 [exp]	1.7	0.8486
					Lus10029150 [exp]	3.2	0.8182
AT5G21105			Plant L-ascorbate oxidase (.1....		Lus10025538 [exp]	3.9	0.8140
AT5G24560		ATPP2-B12	phloem protein 2-B12 (.1)		Lus10025666 [exp]	3.9	0.8067
AT2G27770			Plant protein of unknown funct...		Lus10009405 [exp]	5.5	0.7754
AT4G01400			unknown protein		Lus10002675 [exp]	6.0	0.7867
AT1G12380			unknown protein		Lus10032194 [exp]	6.9	0.8012
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10036710 [exp]	7.5	0.8133
AT1G07710			Ankyrin repeat family protein ...		Lus10015224 [exp]	11.2	0.7765
AT1G64450			Glycine-rich protein family (....		Lus10001818 [exp]	11.7	0.7723

Compare expression of checked genes

Lus10016572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.