Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07645 222 / 4e-76 ATDSI-1VOC dessication-induced 1VOC superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G237500 [exp] 223 / 3e-76 AT1G07645 215 / 3e-73 dessication-induced 1VOC superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0104 [flax] [poplar] Glyoxalase PF00903 [flax] [poplar] Glyoxalase Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10016574 pacid=23144841 polypeptide=Lus10016574 locus=Lus10016574.g ID=Lus10016574.BGIv1.0 annot-version=v1.0 ATGGCGTCATCTGCTCTGAAACCAGCGTTTGCATACACAGTGGTGTACGTCAAGGACGTAGCCAAATCAGTAGACTTCTACGCCAAAGCCTTCGGTTACC ACGTTCGCCGCCTCGACGACTCTTACCGATGGGGAGAGCTGGAGAGCGGGCAGACAACGATAGCGTTCACTCCGATCCACCAGCACGAGACCGATGATAG GACCGGGGAGGTCCATACTCCTAAATCCGGCAGCGAGCGGCCTCCGATGGAGGTTTGCTTCGCCTATGCGGATGTTGATGCTGGATATAAGAGGGCCGTG GAGAACGGGGCGACGCCGGTGAGCCCGCCGGAGGACAAGGAATGGGCTCAGAAAGTCGGATACGTTCGTGACCTCGACGGAAATGTGATCAGACTGGGCA GCCACGTGTCCAGCAAATGA
AA sequence Show only first row Show all	>Lus10016574 pacid=23144841 polypeptide=Lus10016574 locus=Lus10016574.g ID=Lus10016574.BGIv1.0 annot-version=v1.0 MASSALKPAFAYTVVYVKDVAKSVDFYAKAFGYHVRRLDDSYRWGELESGQTTIAFTPIHQHETDDRTGEVHTPKSGSERPPMEVCFAYADVDAGYKRAV ENGATPVSPPEDKEWAQKVGYVRDLDGNVIRLGSHVSSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07645		ATDSI-1VOC	dessication-induced 1VOC super...		Lus10016574 [exp]	0	1
					Lus10027052 [exp]	3.5	0.7192
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10007595 [exp]	9.0	0.7172
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10020687 [exp]	13.2	0.7572
					Lus10023136 [exp]	31.0	0.6890
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024572 [exp]	33.1	0.6577
AT5G16100			unknown protein		Lus10004035 [exp]	34.3	0.6046
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10007246 [exp]	36.7	0.6685
AT5G16600	MYB	ATMYB43	myb domain protein 43 (.1)		Lus10010974 [exp]	39.0	0.6678
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10015094 [exp]	40.4	0.6424
AT4G30880			Bifunctional inhibitor/lipid-t...		Lus10016357 [exp]	41.7	0.6666

Compare expression of checked genes

Lus10016574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.