Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46450 238 / 6e-73 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) AT4G34580 51 / 1e-06 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G18180 50 / 3e-06 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G75370 50 / 3e-06 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36490 49 / 4e-06 ATSFH12 SEC14-like 12 (.1) AT2G21540 49 / 4e-06 ATSFH3 SEC14-like 3 (.1.2.3) AT4G39180 47 / 2e-05 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G19650 47 / 2e-05 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39170 46 / 4e-05 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21520 45 / 7e-05 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040845 [exp] 494 / 1e-172 AT3G46450 453 / 3e-156 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Lus10005452 [exp] 259 / 5e-81 AT3G46450 417 / 2e-142 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Lus10004953 [exp] 232 / 3e-71 AT3G46450 358 / 4e-120 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Lus10025988 [exp] 52 / 9e-07 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10028332 [exp] 51 / 1e-06 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10041779 [exp] 51 / 1e-06 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10040431 [exp] 50 / 4e-06 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10040432 [exp] 49 / 5e-06 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3) Lus10023547 [exp] 49 / 6e-06 AT2G21540 664 / 0.0 SEC14-like 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G028700 [exp] 276 / 5e-88 AT3G46450 472 / 4e-164 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Potri.001G237400 [exp] 268 / 1e-84 AT3G46450 446 / 7e-154 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Potri.009G119500 [exp] 53 / 4e-07 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.007G020300 [exp] 51 / 1e-06 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.005G119700 [exp] 51 / 1e-06 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.004G157700 [exp] 51 / 2e-06 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.004G157600 [exp] 51 / 2e-06 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3) Potri.009G119400 [exp] 50 / 2e-06 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.002G032600 [exp] 50 / 2e-06 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 46 / 4e-05 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10016575 pacid=23144783 polypeptide=Lus10016575 locus=Lus10016575.g ID=Lus10016575.BGIv1.0 annot-version=v1.0 ATGGATGATTTAACACGTGGCAGTATGTCGGTTGACACGTGGCATTCATGCACTGAAATCTCAGACTCTCTGGGCCCTTCTTGTCCTAACAACTGTTGTA TTTTGTACTTCGTTTACCGCTACTCGGGTTGCCAAACCCGACCCGAATTAACGCGTTCTGCTGCTAAACAAACAGAGTTCCCAGTTGCCACGTGTAACGT CTTGACTGAAACAGGGGTCCCCAGTTTTGCCAGAGAGCTCGCCATGAATTCGCTATTTGCCGCGAGCGTTACTTACTTGTTTGTCTCCGCATCAACTACC GCTGATTCCGTTGAATATGCTCCTCCTTTACATTCACTCTCCAAATCGGAGAACAATTCGCCGCTCGCTTCACCGTTGCCATTACTGACTCTTCTTCGTC TCACAGCTCGCCGCCGATATGCGAGTTCCCGTGGGAACTCTCTGGTGGCTACTTCCAGCAATAAGAATGAAATTGGCAAGAGGAATCCTATAGCAGCAGT GCAGAACGCTGTATTTTCTGATGAATCCACTTACTGCACTGAACCTTTGGATGGTAACGATGGTTCTCATACAAATCCGGAAACATCAGCTGATTCACTA TCTAGCCATTCAGCCCTCGATCTAAGTGATGTCAATCCTCCTAGTCTGGCATCTGAAAATTGGATGTTGGAACTCCACAAAGAGCTAGAAAAGCAAGAGA TCGCCTTACCAGAAAGGATCAACGAAGACGAGATAAGGAGATTTTATACTGCTGCAGATGGCGACTTCCAGAGCTTTTTGCCATCAATTAAGAACACAAT CCGTTGGAGGGAAACTTATAGACTTCTTTCAGAACAGGAGCTCGTGACGTGGTCAAACGTAGTGTTCTGGCATGGATATGACATTGAAAACCAGCCCTGC CTTATCGTACGTCTTAGACTAGCCTGCACAAACTTACAAGCTCAGGACAGACCTCGATTTGTTCAAGCAGTCGGTAAATGGTCAGATCTGCAGCATAACT TCCCCAACCGTCTTGGACGCTTAGTCATTATAAGGCTCACTCCAGTCGCCCGTGTTATAGCCCAAACCTTCCTTCAGGTACTGAAACCGGTTACAAAAAA GAAGCTGAGAGTTGAAGGGAACAAGTACCATAAGGTTCTCGCCGAATACCTCCAGACAGTCCCAGCTTATCTCGGCGGCACCTGTTCTTGCCAGAGATGC TTGGATACTGGACACCACAATGTGCTGGGGCAGACGACTGACGACACAAACAAGAGAGAGCTTGATCAATGTCGCCCTGAGGCATCACTGCCTCTGATCA CTTCTCAGGCTAACGACAATTGTCGGCCGAATTACGCAGCCGAGTGGGACCGGCTATTGAAAACTGCCTTAATCGGCATTATCATGGCTTGA
AA sequence Show only first row Show all	>Lus10016575 pacid=23144783 polypeptide=Lus10016575 locus=Lus10016575.g ID=Lus10016575.BGIv1.0 annot-version=v1.0 MDDLTRGSMSVDTWHSCTEISDSLGPSCPNNCCILYFVYRYSGCQTRPELTRSAAKQTEFPVATCNVLTETGVPSFARELAMNSLFAASVTYLFVSASTT ADSVEYAPPLHSLSKSENNSPLASPLPLLTLLRLTARRRYASSRGNSLVATSSNKNEIGKRNPIAAVQNAVFSDESTYCTEPLDGNDGSHTNPETSADSL SSHSALDLSDVNPPSLASENWMLELHKELEKQEIALPERINEDEIRRFYTAADGDFQSFLPSIKNTIRWRETYRLLSEQELVTWSNVVFWHGYDIENQPC LIVRLRLACTNLQAQDRPRFVQAVGKWSDLQHNFPNRLGRLVIIRLTPVARVIAQTFLQVLKPVTKKKLRVEGNKYHKVLAEYLQTVPAYLGGTCSCQRC LDTGHHNVLGQTTDDTNKRELDQCRPEASLPLITSQANDNCRPNYAAEWDRLLKTALIGIIMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46450			SEC14 cytosolic factor family ...		Lus10016575 [exp]	0	1
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10023529 [exp]	14.5	0.6573
					Lus10026843 [exp]	19.0	0.6000
					Lus10000964 [exp]	31.7	0.5973
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10015050 [exp]	35.1	0.5672
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Lus10017024 [exp]	72.6	0.5305
AT3G57600	AP2_ERF	DREB2F	Integrase-type DNA-binding sup...		Lus10011319 [exp]	97.3	0.5210
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004602 [exp]	186.6	0.4728

Compare expression of checked genes

Lus10016575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.