Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55260 615 / 0 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) AT4G26720 598 / 0 PPX-1, EP129, EP124, PPX1 PROTEIN PHOSPHATASE X-1, protein phosphatase X 1 (.1) AT1G10430 437 / 2e-154 PP2A-2 protein phosphatase 2A-2 (.1) AT1G59830 435 / 9e-154 PP2A-1 protein phosphatase 2A-2 (.1.2) AT2G42500 435 / 2e-153 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT1G69960 434 / 5e-153 PP2A serine/threonine protein phosphatase 2A (.1) AT3G58500 434 / 6e-153 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT1G50370 402 / 7e-141 AtFYPP1 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT3G19980 401 / 3e-140 STPP, ATFYPP3, EMB2736 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) AT2G39840 289 / 5e-96 TOPP4 type one serine/threonine protein phosphatase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033122 [exp] 437 / 3e-154 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Lus10013287 [exp] 436 / 5e-154 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10030810 [exp] 436 / 5e-154 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10042160 [exp] 438 / 6e-154 AT1G10430 611 / 0.0 protein phosphatase 2A-2 (.1) Lus10039185 [exp] 431 / 8e-152 AT2G42500 624 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10025174 [exp] 430 / 2e-151 AT2G42500 619 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10036657 [exp] 428 / 1e-150 AT1G10430 598 / 0.0 protein phosphatase 2A-2 (.1) Lus10016053 [exp] 422 / 2e-148 AT2G42500 610 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10013754 [exp] 418 / 3e-147 AT2G42500 601 / 0.0 protein phosphatase 2A-3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G092200 [exp] 628 / 0 AT5G55260 613 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.001G358700 [exp] 621 / 0 AT5G55260 609 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.015G068300 [exp] 437 / 1e-154 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Potri.010G039700 [exp] 437 / 2e-154 AT1G10430 609 / 0.0 protein phosphatase 2A-2 (.1) Potri.008G191600 [exp] 437 / 2e-154 AT1G10430 610 / 0.0 protein phosphatase 2A-2 (.1) Potri.012G073300 [exp] 436 / 9e-154 AT1G10430 605 / 0.0 protein phosphatase 2A-2 (.1) Potri.003G217900 [exp] 435 / 2e-153 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.016G062000 [exp] 434 / 3e-153 AT3G58500 622 / 0.0 protein phosphatase 2A-4 (.1) Potri.001G007800 [exp] 433 / 7e-153 AT2G42500 628 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.006G196100 [exp] 433 / 1e-152 AT3G58500 620 / 0.0 protein phosphatase 2A-4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10016576 pacid=23143975 polypeptide=Lus10016576 locus=Lus10016576.g ID=Lus10016576.BGIv1.0 annot-version=v1.0 ATGTCAAGGGAAGCAATGTATATGACGGTCATTGTGAACCCTACTGTAATCGACAAAGAAGATGAAGATGTTGCAATCAACAAAGAAGATGAAGGTGCAG AGTTAATGGGGATGTGTCCTTCTCGCTTGAAGTGGCTGAGCAGTAGTCTGTTAGAGAGGATCTTCGGCGCTTTCCAAATTTTATTCAATTCCGTGTCGAA GGAAGCAATTAGGCACTGCGTCGAGATGTCAGACCTAGATAGGCAGATTGAGCAGCTTAAGAAGTGCGAGCCTTTGAAAGAATCGGAAGTCAAGGCTCTG TGCTTGAAAGCTATGGAGATTCTCGTCGAAGAGAGCAACGTTCAGCGCGTGGACGCCCCTGTCACTATATGTGGAGACATTCATGGACAGTTCTATGACC TGAAGGAGCTTTTCAAAGTAGGAGGAGATTGCCCAAAAACTAATTACTTATTTCTTGGAGATTTTGTTGATAGAGGATTCTACTCGGTTGAGACATTTTT GCTTCTGCTTGCCCTTAAGGTGCGATATCCAGATAGAATAACTCTCATCAGAGGAAATCATGAGAGCCGTCAGATAACACAGGTGTATGGTTTCTATGAT GAGTGCCTACGAAAATACGGCTCTGTTAATGTTTGGAGATATTGCACTGACATATTTGATTACCTAAGTTTGTCAGCCCTCATTGAGAACAAAGTTTTCA GTGTCCACGGTGGCCTTTCTCCTGCGATATCAACCTTGGATCAGATCCGAACCATTGATCGAAAGCAAGAAGTGCCTCATGATGGTGCCATGTGTGACCT AATGTGGTCAGATCCTGAAGATATTGTGGATGGTTGGGGTTTGAGCCCACGTGGTGCAGGGTTCCTGTTTGGTGGCAGCGTGGTTAGTTCTTTCAACCAC TCAAATAATATAGACTACATTTGTCGCGCTCATCAGTTGGTTATGGAAGGGTACAAATGGATGTTTAATGATCAAATCGTTACTGTTTGGTCGGCTCCAA ACTACTGTTACAGATGTGGTAATGTCGCTGCAATCCTTGAGCTGGATGAGAACCTCAACAAACAATTTCGTGTGTTTGATGCTGCCCCTCAGGAATCAAG AGGAGCACCTGCGAAAAAGGCAGCCCCTGATTACTTTTTATGA
AA sequence Show only first row Show all	>Lus10016576 pacid=23143975 polypeptide=Lus10016576 locus=Lus10016576.g ID=Lus10016576.BGIv1.0 annot-version=v1.0 MSREAMYMTVIVNPTVIDKEDEDVAINKEDEGAELMGMCPSRLKWLSSSLLERIFGAFQILFNSVSKEAIRHCVEMSDLDRQIEQLKKCEPLKESEVKAL CLKAMEILVEESNVQRVDAPVTICGDIHGQFYDLKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYD ECLRKYGSVNVWRYCTDIFDYLSLSALIENKVFSVHGGLSPAISTLDQIRTIDRKQEVPHDGAMCDLMWSDPEDIVDGWGLSPRGAGFLFGGSVVSSFNH SNNIDYICRAHQLVMEGYKWMFNDQIVTVWSAPNYCYRCGNVAAILELDENLNKQFRVFDAAPQESRGAPAKKAAPDYFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55260		EP128, PPX-2, P...	PROTEIN PHOSPHATASE X -2, prot...		Lus10016576 [exp]	0	1
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10011814 [exp]	3.2	0.8533
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10019875 [exp]	5.0	0.8535
AT1G59650		CW14	Protein of unknown function (D...		Lus10039463 [exp]	6.0	0.8306
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10011940 [exp]	7.1	0.8274
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10028417 [exp]	7.3	0.7881
AT2G16880			Pentatricopeptide repeat (PPR)...		Lus10041421 [exp]	7.3	0.8157
AT2G31440			unknown protein		Lus10027036 [exp]	9.2	0.7850
AT4G38350			Patched family protein (.1.2)		Lus10016019 [exp]	10.5	0.7671
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10017371 [exp]	11.6	0.7976
AT5G42620			metalloendopeptidases;zinc ion...		Lus10016304 [exp]	12.7	0.7674

Compare expression of checked genes

Lus10016576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.