Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79590 295 / 3e-102 ATSYP52, SYP52 syntaxin of plants 52 (.1.2) AT1G16240 289 / 1e-99 ATSYP51, SYP51 syntaxin of plants 51 (.1.2.3) AT1G16230 164 / 3e-51 Target SNARE coiled-coil domain protein (.1) AT1G16225 121 / 3e-34 Target SNARE coiled-coil domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002446 [exp] 341 / 1e-120 AT1G16240 265 / 2e-90 syntaxin of plants 51 (.1.2.3) Lus10017686 [exp] 45 / 1e-05 AT1G28490 299 / 8e-103 syntaxin of plants 61 (.1.2) Lus10014759 [exp] 42 / 0.0003 AT3G09740 308 / 4e-102 syntaxin of plants 71 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G032900 [exp] 270 / 2e-92 AT1G79590 249 / 1e-83 syntaxin of plants 52 (.1.2) Potri.016G030100 [exp] 265 / 2e-90 AT1G79590 265 / 3e-90 syntaxin of plants 52 (.1.2) Potri.006G032800 [exp] 259 / 5e-88 AT1G79590 238 / 2e-79 syntaxin of plants 52 (.1.2) Potri.016G030200 [exp] 255 / 2e-86 AT1G79590 246 / 9e-83 syntaxin of plants 52 (.1.2) Potri.004G050800 [exp] 49 / 4e-07 AT1G28490 297 / 2e-102 syntaxin of plants 61 (.1.2) Potri.011G059700 [exp] 46 / 6e-06 AT1G28490 310 / 2e-107 syntaxin of plants 61 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10016577 pacid=23143943 polypeptide=Lus10016577 locus=Lus10016577.g ID=Lus10016577.BGIv1.0 annot-version=v1.0 ATGGCATCTTCCTACGATGCTTGGATGAAGGAGTACAATGAAGCAGCAAAGCTTTCTGATGATATTACTGCAATGATATCCGAAAGGACTTCTCTGCCTT CAACTGGACCTGAGAGTCAACGCTATGCTTCTGCTACCCGGAGGAAGATCACCATATTGGGGACCAGACTTGATAGTTTGCAGTCCCTTTTGACAAAGCT TCCCGGAAAGCAGCAAGTATCAGAGAAAGAAATGAACCGCCGAAGGGATATGATTGGGAACTTAAGAACAAAAGCCAACCAGATGGCTTCCACGTTGAAC ATGTCAAATTTTACTAACAGGGATAGTTTGTTAGGCCCTGAAATAAAGCAAGCTGATATTATGAATCGGACAACTGAGCAAGATGAGGGCCTTGAGAAGC TTGAGGAGACAGTGATAAGTACAAAACATATTGCATTGGCAGTCAATGAGGAACTGGATCTTCACACCAGACTTATTGATGACTTGGATCAGCATGTGGA CGTAACAGATTCCCGCTTACGGAGAGTGCAGAAGCAATTAGGAGTATTGAACAAGAGGACCAAGGGAGGTTGCAGCTGCATGTGCATGCTTCTGGCGGTG ATTGGGATAGTGGCTCTGGTTGTGGTCATATACATGCTCATCAAGTATTTATGA
AA sequence Show only first row Show all	>Lus10016577 pacid=23143943 polypeptide=Lus10016577 locus=Lus10016577.g ID=Lus10016577.BGIv1.0 annot-version=v1.0 MASSYDAWMKEYNEAAKLSDDITAMISERTSLPSTGPESQRYASATRRKITILGTRLDSLQSLLTKLPGKQQVSEKEMNRRRDMIGNLRTKANQMASTLN MSNFTNRDSLLGPEIKQADIMNRTTEQDEGLEKLEETVISTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKQLGVLNKRTKGGCSCMCMLLAV IGIVALVVVIYMLIKYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Lus10016577 [exp]	0	1
AT2G36320			A20/AN1-like zinc finger famil...		Lus10035603 [exp]	2.4	0.8567
AT1G63290			Aldolase-type TIM barrel famil...		Lus10032052 [exp]	3.6	0.8711
AT5G01830			ARM repeat superfamily protein...		Lus10006090 [exp]	4.5	0.8686
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10037777 [exp]	4.6	0.8647
AT5G17165			unknown protein		Lus10002135 [exp]	6.7	0.8572
AT1G07940			GTP binding Elongation factor ...		Lus10023497 [exp]	8.9	0.8496
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Lus10029820 [exp]	8.9	0.8591
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Lus10032532 [exp]	9.5	0.8320
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020735 [exp]	9.8	0.8403
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10041953 [exp]	12.4	0.8468

Compare expression of checked genes

Lus10016577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.