Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26700 961 / 0 ATFIM1 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) AT5G35700 955 / 0 FIM2, FIM5 FIMBRIN5, fimbrin-like protein 2 (.1) AT5G55400 935 / 0 Actin binding Calponin homology (CH) domain-containing protein (.1) AT2G04750 909 / 0 Actin binding Calponin homology (CH) domain-containing protein (.1) AT5G48460 873 / 0 Actin binding Calponin homology (CH) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014894 [exp] 1256 / 0 AT4G26700 946 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Lus10038235 [exp] 867 / 0 AT5G48460 1068 / 0.0 Actin binding Calponin homology (CH) domain-containing protein (.1) Lus10025865 [exp] 823 / 0 AT5G48460 1013 / 0.0 Actin binding Calponin homology (CH) domain-containing protein (.1) Lus10012361 [exp] 767 / 0 AT5G35700 843 / 0.0 FIMBRIN5, fimbrin-like protein 2 (.1) Lus10006407 [exp] 428 / 5e-142 AT5G35700 842 / 0.0 FIMBRIN5, fimbrin-like protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G360100 [exp] 1059 / 0 AT4G26700 1019 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Potri.011G086500 [exp] 1054 / 0 AT4G26700 1025 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Potri.014G163100 [exp] 948 / 0 AT5G35700 1028 / 0.0 FIMBRIN5, fimbrin-like protein 2 (.1) Potri.002G251600 [exp] 897 / 0 AT5G48460 1108 / 0.0 Actin binding Calponin homology (CH) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0188 [flax] [poplar] CH PF00307 [flax] [poplar] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Lus10016580 pacid=23143974 polypeptide=Lus10016580 locus=Lus10016580.g ID=Lus10016580.BGIv1.0 annot-version=v1.0 ATGTCTAGCTATTTAGGCGTTCAAGTTTCTGATCCATCGCTTCAGAATCATTTCACGCAGGTGGAGCTTCGGGGCCTCAAATCTAAATATACGTCGGTAA AGAATGCAAAAGGCGAAGTTACAGTTGGAGATCTACCATCTTTGTTGGTGACGTTGAAAGCATTTGCTTCAACGTGCAAGGAGGATGAGATTTCAGCTCT ATTGGCTCAATCCTTTCCCGATTTCACTGTCGATATAGACTTTGAAGGCTTTCTCAGGGTATACGTGAGTTTGCAAGGTCAAGCTCACGCAAAATCAGGG AATTCAAAAGGAGCCTCATCATTCCTCAAGGCCTCAGTAACAACTTTACTTCACACTATTAGTCAGTCAGAGCGAGCATTATATGTAGCTCACATTAACA GTTATCTTGAGGACGACCCATTTCTGAAGCAGTTTCTTCCCTTGGGTTCATCACCTAATGATTTGTTTGACCTTGCAAAGGATGGAGTTCTTCTTTGTAA GCTTATCAATGTTGCTGTGCCTGGGACAATCGATGAACGGGCTATCAATTGTAAACGGGTTCTTAACCTTTGGGAAAGGAATGAGAACCACACCCTTTGC CTCAACTCTGCAAAGGCTATCGGGTGCACAGTAGTTAACATTGGTGCACAGGACTTGGTGGAAGCTAGACCTCATCTGGTGCTTGGTTTAATTTCTCAGA TCATAAAGATTCAATTACTAGCAGATCTCAACCTCAAGAAAACACCTCAGCTCGTGGAATTGGTGGAGGACAACACTGATGTTGAGGAACTTATGAGCTT GGCTCCTGAAAAACTGTTACTGAAGTGGATGAATTTCCATCTAAGCAAAGCAGGATATGAAAAACGTGTTACAAACTTCTCTTCCGATTTGAAGGATGGA AAGGCATATGCCTACCTGCTTAATGTTCTTGCACCAGAGCACTGCAATCCAGATACATTGGATGCACCAAACCCGTTTGAGAGGGCTACACTAGTACTTG ACCATGCCGAGAAAATGGGCTGTAAGCGGTATCTAAAACCATCAGACATTGTTGAAGGCTCATCCAATCTGAATCTTGCATTCATTGCTCAAATATTTCA CCGGAGGAGTGGCTTGAGTACAGATGGCAAAAAGTATGCTTTTGCAGAGATGATGACTGATGATGTACAAACATCCAGAGAAGAGAGATGCTTTAGATTG TGGATCAATAGTCTTAACGCTAGCTATTGTAACAACGTGTTTGAGGATGTTAGGAATGGTTGGATACTTCTTGAAGTACTTGATAAGATCGCCCCTGGAT CAGTTAACTGGAAGCATGCAACAAAACCTCCCATAAAAATGCCATTCAGGAAGGTGGAAAATTGCAATCAGGTGATAAAGATTGGGAGACAGCTGAGTTT CTCTCTTGTTAATGTTGCTGGGAATGATATTGTCCAAGGAAATAAGAAACTCATTCTGGCTTTCTTGTGGCAGTTGATGAGATATTCCATGCTTCAACTT CTGAAAAATTTAAGATCGCACTCCCAAGGAAAGGAAGTAACTGATGCCGATATCCTGCATTGGGTTAACAAGAAAGTTCGAAGTATGGGCAGGACTTCTC GAATCGAGAACTTTAAGGATAAGAGCATTTCAAATGGTAGATTCTTACTTGAGCTTCTCAGTTCCGTGGAACCAAGAGTGGTAAACTGGAACCTGGTCAC CAAGGGTGAAAGTGAGGATGAGAAGAGATTGAATGCTACATACATAATCAGTGTGGCCAGGAAGCTTGGCTGTTCGATTTTCTTGTTGCCGGAGGATATC ATGGAGGTAAACCAGAAGATGATTCTTACGCTAGCCGCGAGCATAATGTACTGGAGCCTTCAAAAAGCAGTGGAAGATGGGGAACCTTTATCACCTGCAC CTTCTGTTTGCGGTGAGGATGAAAGCTCCTCCATCTCCGGTGATGTCTCAAGCTTAATCATTGACGATGCAGCCTCAGATACCACAGTTTCCTCCTCGCA TCTTGACAACGAGGAAACTTGTGCAGGAGAGTGA
AA sequence Show only first row Show all	>Lus10016580 pacid=23143974 polypeptide=Lus10016580 locus=Lus10016580.g ID=Lus10016580.BGIv1.0 annot-version=v1.0 MSSYLGVQVSDPSLQNHFTQVELRGLKSKYTSVKNAKGEVTVGDLPSLLVTLKAFASTCKEDEISALLAQSFPDFTVDIDFEGFLRVYVSLQGQAHAKSG NSKGASSFLKASVTTLLHTISQSERALYVAHINSYLEDDPFLKQFLPLGSSPNDLFDLAKDGVLLCKLINVAVPGTIDERAINCKRVLNLWERNENHTLC LNSAKAIGCTVVNIGAQDLVEARPHLVLGLISQIIKIQLLADLNLKKTPQLVELVEDNTDVEELMSLAPEKLLLKWMNFHLSKAGYEKRVTNFSSDLKDG KAYAYLLNVLAPEHCNPDTLDAPNPFERATLVLDHAEKMGCKRYLKPSDIVEGSSNLNLAFIAQIFHRRSGLSTDGKKYAFAEMMTDDVQTSREERCFRL WINSLNASYCNNVFEDVRNGWILLEVLDKIAPGSVNWKHATKPPIKMPFRKVENCNQVIKIGRQLSFSLVNVAGNDIVQGNKKLILAFLWQLMRYSMLQL LKNLRSHSQGKEVTDADILHWVNKKVRSMGRTSRIENFKDKSISNGRFLLELLSSVEPRVVNWNLVTKGESEDEKRLNATYIISVARKLGCSIFLLPEDI MEVNQKMILTLAASIMYWSLQKAVEDGEPLSPAPSVCGEDESSSISGDVSSLIIDDAASDTTVSSSHLDNEETCAGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10016580 [exp]	0	1
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10005934 [exp]	1.7	0.8596
AT5G22850			Eukaryotic aspartyl protease f...		Lus10005356 [exp]	3.5	0.8210
AT5G05930		ATGC1	ARABIDOPSIS GUANYLYL CYCLASE 1...		Lus10009875 [exp]	3.9	0.8193
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Lus10041716 [exp]	4.9	0.7989
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Lus10019379 [exp]	4.9	0.8155
AT5G08710		RUG1	RCC1/UVR8/GEF-like 1, Regulato...		Lus10035957 [exp]	5.7	0.8281
AT2G35510		SRO1	similar to RCD one 1 (.1)		Lus10035390 [exp]	6.3	0.8324
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10001011 [exp]	7.7	0.8108
AT4G16380			Heavy metal transport/detoxifi...		Lus10001913 [exp]	8.7	0.7973
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10031939 [exp]	8.8	0.8178

Compare expression of checked genes

Lus10016580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.