Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22360 187 / 1e-54 SWIB complex BAF60b domain-containing protein (.1) AT1G49520 114 / 9e-28 SWIB complex BAF60b domain-containing protein (.1) AT3G19080 109 / 1e-25 SWIB complex BAF60b domain-containing protein (.1) AT2G14880 71 / 1e-14 SWIB/MDM2 domain superfamily protein (.1) AT4G34290 69 / 6e-14 SWIB/MDM2 domain superfamily protein (.1) AT2G35605 68 / 9e-14 SWIB/MDM2 domain superfamily protein (.1) AT3G03590 67 / 3e-13 SWIB/MDM2 domain superfamily protein (.1) AT1G31760 56 / 9e-10 SWIB/MDM2 domain superfamily protein (.1) AT4G26810 47 / 2e-06 SWIB/MDM2 domain superfamily protein (.1.2) AT3G48600 43 / 0.0002 SWIB complex BAF60b domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014892 [exp] 452 / 5e-157 AT4G22360 243 / 2e-76 SWIB complex BAF60b domain-containing protein (.1) Lus10019640 [exp] 109 / 5e-26 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1) Lus10009333 [exp] 106 / 2e-25 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1) Lus10005667 [exp] 72 / 8e-15 AT3G03590 118 / 4e-35 SWIB/MDM2 domain superfamily protein (.1) Lus10013893 [exp] 65 / 2e-12 AT2G14880 143 / 7e-45 SWIB/MDM2 domain superfamily protein (.1) Lus10002106 [exp] 56 / 5e-10 AT4G34290 109 / 2e-32 SWIB/MDM2 domain superfamily protein (.1) Lus10025974 [exp] 47 / 3e-05 AT3G51120 395 / 3e-120 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10038799 [exp] 43 / 0.0002 AT4G26810 160 / 1e-50 SWIB/MDM2 domain superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G010700 [exp] 187 / 1e-54 AT4G22360 303 / 2e-100 SWIB complex BAF60b domain-containing protein (.1) Potri.016G013400 [exp] 183 / 4e-53 AT4G22360 301 / 1e-99 SWIB complex BAF60b domain-containing protein (.1) Potri.009G106700 [exp] 122 / 8e-31 AT1G49520 301 / 5e-100 SWIB complex BAF60b domain-containing protein (.1) Potri.004G145200 [exp] 121 / 2e-30 AT1G49520 308 / 6e-103 SWIB complex BAF60b domain-containing protein (.1) Potri.005G134500 [exp] 114 / 4e-28 AT3G19080 226 / 3e-70 SWIB complex BAF60b domain-containing protein (.1) Potri.001G297400 [exp] 68 / 1e-13 AT2G14880 142 / 3e-44 SWIB/MDM2 domain superfamily protein (.1) Potri.009G092200 [exp] 67 / 3e-13 AT2G14880 169 / 7e-55 SWIB/MDM2 domain superfamily protein (.1) Potri.013G070600 [exp] 58 / 5e-10 AT2G35605 108 / 2e-31 SWIB/MDM2 domain superfamily protein (.1) Potri.007G039350 [exp] 56 / 2e-09 AT3G19080 118 / 4e-32 SWIB complex BAF60b domain-containing protein (.1) Potri.015G137600 [exp] 40 / 0.0002 AT4G26810 181 / 1e-60 SWIB/MDM2 domain superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08766 [flax] [poplar] DEK_C DEK C terminal domain PF02201 [flax] [poplar] SWIB SWIB/MDM2 domain
Representative CDS sequence Show only first row Show all	>Lus10016581 pacid=23143980 polypeptide=Lus10016581 locus=Lus10016581.g ID=Lus10016581.BGIv1.0 annot-version=v1.0 ATGACGGACCAAGAGATATCTCAAGCCTTGCACTCCCTCCTCCAATATTACTCATCTTCATCCTCCTCTCAATCTTCAAACCCTAACTCACCGACGGCGG CTCCCTTCACCTCCATCACCTCCGTCGTCCAGTACCTAGAGACTAAGTTTGGCGTCGATCTCTCCCACAAGGCCGACTTCATCCGTTCTCAGCTCCAGCA ATTCCTCTTCCAACCTCAGGCCCCACCGCAGCAGCCTACACCTCCACCGCTGCACCACCAGCAGCAACATCAACACCTTCAACACCACCACCAAGTGCAT CCTTACCACCACCAGCAGCAGCAGCAGCATCTCCATCTCCAACACCACCATCAATTGCAGCAGCAGCAGCATCCGCATCTGCAGATACAAACACAGCAGC CTTCCTCCTTCCATCCAAAGGACCATTATGCCCTCCAACAATCTCCTAATTTCCATCCAGGTCATTCCCCGTCTTTCTTCTCCTCTCCTTTCCCTCCTGG CGGCTTGTCCTTCCAGTCTGTCCCTACCAATCATCATGTTAAGTCCGATACGACCATTCTCTCCAACTCTGCCCTTCCTGCTGGAGACCCTGCTAAGGCC AGTGGTCCGAGTAAAGGCAAAAGGAGAGGCGGTGCAGGAGGTCTAAACAAGCTTTGCGGTGTTTCGCCCGAACTTGAGGCTGTTGTAGGCCACCCTGCTC TTCCAAGGACTGAGATCGTAAGGCAGTTGTGGGCTTACATCAGAAAGAACAACCTCCAGGATCCGAGCAACAAGAGGAAGATTATCTGCAACGATGCTCT GCGTTTGGTGTTTGAGACCGACTGTACTGACATGTTCAAGATGAACAAGCTGCTGTCAAAGCATATACTCCCTCTTGACCCTACCAAGGAGGCTAGTGCC AAGAAACAGAAAGTTGCTGATGAGGACAAGAAGGAGTCTTCTGATGTGACACAGACGGTCACACAAACCATTTCTGTTTCTGGTGTTACACAAAGCGCTT CCGGTGTGACACAGAGCGTGCCAGATCAATCACCTCCATCTCCAACTGTTGATTTATCTCCAGCTCCAACTTCAGCGGCAGCTCCTGATCTGCCTCAAGC TCCAGCTCCAGCTCCAGCTGTAGCTCCAGCTGAAGCTCCAGCACAGGCTCCAGCTCCTTCAGTCGGGATATCTGATGAATTAGCCAACTTCTTTGGTGTT GGGGCGAGGGAGATGTTGCAATCTGAGGTTTTCACCCGAGTACTGGACTACATCAATTCCAACAATCTGGAGGATCCTGTAAATCCAACGGTGGTTGTAT GCGACTCAAAGCTTGAGGAGCTGTTTGGTTGTCAAAGTTTCCCGGCCTCGAAGATAATGGAAGTGTTGTCCCGTCAGCATATATTTAGGGCATGA
AA sequence Show only first row Show all	>Lus10016581 pacid=23143980 polypeptide=Lus10016581 locus=Lus10016581.g ID=Lus10016581.BGIv1.0 annot-version=v1.0 MTDQEISQALHSLLQYYSSSSSSQSSNPNSPTAAPFTSITSVVQYLETKFGVDLSHKADFIRSQLQQFLFQPQAPPQQPTPPPLHHQQQHQHLQHHHQVH PYHHQQQQQHLHLQHHHQLQQQQHPHLQIQTQQPSSFHPKDHYALQQSPNFHPGHSPSFFSSPFPPGGLSFQSVPTNHHVKSDTTILSNSALPAGDPAKA SGPSKGKRRGGAGGLNKLCGVSPELEAVVGHPALPRTEIVRQLWAYIRKNNLQDPSNKRKIICNDALRLVFETDCTDMFKMNKLLSKHILPLDPTKEASA KKQKVADEDKKESSDVTQTVTQTISVSGVTQSASGVTQSVPDQSPPSPTVDLSPAPTSAAAPDLPQAPAPAPAVAPAEAPAQAPAPSVGISDELANFFGV GAREMLQSEVFTRVLDYINSNNLEDPVNPTVVVCDSKLEELFGCQSFPASKIMEVLSRQHIFRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22360			SWIB complex BAF60b domain-con...		Lus10016581 [exp]	0	1
AT5G64730			Transducin/WD40 repeat-like su...		Lus10003855 [exp]	1.0	0.8680
AT4G35930			F-box family protein (.1)		Lus10025956 [exp]	4.2	0.8141
AT3G26990			ENTH/VHS family protein (.1)		Lus10032013 [exp]	4.5	0.8279
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10018904 [exp]	4.6	0.8260
AT5G48385			FRIGIDA-like protein (.1)		Lus10002146 [exp]	4.9	0.8142
AT5G50970			transducin family protein / WD...		Lus10043205 [exp]	5.5	0.8339
AT1G60670			Protein of unknown function (D...		Lus10012911 [exp]	7.3	0.8275
AT3G13670			Protein kinase family protein ...		Lus10013737 [exp]	8.3	0.7879
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019605 [exp]	8.4	0.8048
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10001726 [exp]	11.0	0.7510

Compare expression of checked genes

Lus10016581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.