Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55470 758 / 0 ATNHX3 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) AT3G05030 616 / 0 ATNHX2, NHX2 sodium hydrogen exchanger 2 (.1.2) AT5G27150 596 / 0 AT-NHX1, ATNHX1, NHX1 Na+/H+ exchanger 1, Na+/H+ exchanger 1 (.1) AT3G06370 553 / 0 ATNHX4, NHX4 sodium hydrogen exchanger 4 (.1) AT1G79610 186 / 2e-52 ATNHX6 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) AT1G54370 169 / 4e-46 NHX5, ATNHX5 NA+/H+ ANTIPORTER 5, sodium hydrogen exchanger 5 (.1) AT2G01980 74 / 2e-13 ATSOS1, SOS1, ATNHX7 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) AT1G14660 66 / 4e-11 ATNHX8 SODIUM HYDROGEN EXCHANGER 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8 (.1), Na+/H+ exchanger 8 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014891 [exp] 659 / 0 AT5G55470 528 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) Lus10004141 [exp] 606 / 0 AT3G05030 846 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10033840 [exp] 599 / 0 AT3G05030 854 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10012801 [exp] 597 / 0 AT3G05030 790 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10005934 [exp] 587 / 0 AT3G05030 768 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10040903 [exp] 585 / 0 AT3G05030 769 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10001718 [exp] 541 / 0 AT3G05030 748 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10018989 [exp] 519 / 3e-176 AT3G05030 750 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10038727 [exp] 147 / 9e-38 AT1G79610 749 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G031500 [exp] 622 / 0 AT3G05030 792 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.005G045100 [exp] 608 / 0 AT3G05030 840 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.013G031700 [exp] 597 / 0 AT3G05030 834 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.013G026600 [exp] 597 / 0 AT3G05030 548 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.014G134900 [exp] 592 / 0 AT3G05030 707 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.016G000200 [exp] 159 / 3e-42 AT1G79610 724 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) Potri.008G140700 [exp] 66 / 6e-11 AT2G01980 1345 / 0.0 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) Potri.010G100900 [exp] 56 / 5e-08 AT2G01980 1363 / 0.0 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10016583 pacid=23144011 polypeptide=Lus10016583 locus=Lus10016583.g ID=Lus10016583.BGIv1.0 annot-version=v1.0 ATGATGGAGAAGATATTATTGGTTAACCAGACAAAGATGTGGGAAAATGTGTCACCGGAACACGAACAAGTGATCCCAATGACGATATTCGTGGCAGTGC TATGCCTCTGCTTTGTGGTTGGCCATTTGCTTGAAGAGAATCGTTGGGTTAACGAGTCCATCACTGCCATCTTCATCGGATTTATGACTGGAATCTTGAT ATTGGTACTCAGGAAGGGTGAAAGTTCTCACCTTTTGAGGTTCAGTGAAGAGCTCTTCTTCATTTACCTCCTTCCACCCATCATTTTCAATGCAGGATTT CAGGTGAAGAAGAAGCATTTCTTTCAGAACTTTGTAACCATAATGTTGTTTGGGATCGTTGGGGTTTTCATCTCCACGGTCATTATCTCCCTAGGCTGTT GGTGGCTGTTTCCCAAGCTAGGATTCCTTGGCCTCACTCCACGAGATTACCTGGCTGTAGGAACCATATTCTCATCCACTGATACAGTGTGCACGCTACA GGTTCTGCACCAAGATGAGACTCCTCTACTATACAGCATAGTGTTTGGGGAAGGAGTAGTGAACGATGCAACATCAGTTGTTCTGTTCAATGCTATTCAG AAGATGGATGTTAGCAAAATCAACTCTCACACTATCCTTGGTGTCATTGCAGATTTCTTTTACTTGTTCTCAACCAGCACTGCTCTCGGGATTCTTGTTG GTCTTCTGACTGCCTTTGTCCTCAAACGGCTCTACTTTGGCAAACATTCAAGCACACGTGAGCTTGCCTTGATGGTTTTAATGGCTTACCTCTCATACAT GCTCGCCGAGCTGCTGGAGCTAAGTGGAATTCTTACTGTTTTCTTTTGTGGAATTATCATGTCACATTATTCTTGGTACAATGTGACTGAGAGCTCCAGG ATCACAGCCAGGCATGTTTTTGCTATGTTGTCTTTTGTTGCGGAAACTTTCATATTCCTTTATGTGGGGATGGATGCTCTCGACAGTGAGAAGTGGAAGA TGACGAAACTCAGCTTTGGAACTTCAGTCGAGATCTATAGCACAATAGTGTTTCTCATATTGCTGGGGCGTGCTGTTTTTGTGTTTCCACTATCTGCATT TTCTAACTTCATGAACAGACGCAAAACATCCCCACTCAGCCTTAAACAACAAGTTGTCATTTGGTGGGCTGGTCTCATGAGAGGGGCAGTGTCCATCGCT CTGGCTTTTAAGCAGTTCACTTATTCTGGTGTAACGTGGGATCCAATCAACGCAACAATGATCACCAACACCATTATAGTTGTTCTCTTCACTACACTGG TATTTGGTTTCTTGACGAAGCCCCTAGTAAATTATCTGATCACGCACCAACTCCGAAACAGAAACAGAAACAATCAGGCCGGTGGAAGAGAAGCAACCTC CCCAAAGGAGGATGACACAGACACAATCCTTCCTTTGCTGTCTTTTGACGAATCTACATCAGCAAACATGCAGATTGCAAGGGAAAGTTTTTCCATGTTG ATGGACAGGCCAGTTTACACCATCCATCATTACTGGAGGAGGTTTGATAATACCTACATGAGACCCATCTTTGGTGGACCTCCACATAATCCCTCACACT GCTGA
AA sequence Show only first row Show all	>Lus10016583 pacid=23144011 polypeptide=Lus10016583 locus=Lus10016583.g ID=Lus10016583.BGIv1.0 annot-version=v1.0 MMEKILLVNQTKMWENVSPEHEQVIPMTIFVAVLCLCFVVGHLLEENRWVNESITAIFIGFMTGILILVLRKGESSHLLRFSEELFFIYLLPPIIFNAGF QVKKKHFFQNFVTIMLFGIVGVFISTVIISLGCWWLFPKLGFLGLTPRDYLAVGTIFSSTDTVCTLQVLHQDETPLLYSIVFGEGVVNDATSVVLFNAIQ KMDVSKINSHTILGVIADFFYLFSTSTALGILVGLLTAFVLKRLYFGKHSSTRELALMVLMAYLSYMLAELLELSGILTVFFCGIIMSHYSWYNVTESSR ITARHVFAMLSFVAETFIFLYVGMDALDSEKWKMTKLSFGTSVEIYSTIVFLILLGRAVFVFPLSAFSNFMNRRKTSPLSLKQQVVIWWAGLMRGAVSIA LAFKQFTYSGVTWDPINATMITNTIIVVLFTTLVFGFLTKPLVNYLITHQLRNRNRNNQAGGREATSPKEDDTDTILPLLSFDESTSANMQIARESFSML MDRPVYTIHHYWRRFDNTYMRPIFGGPPHNPSHC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55470		ATNHX3	Na+/H+ \(sodium hydrogen\) exc...		Lus10016583 [exp]	0	1
AT3G51250			Senescence/dehydration-associa...		Lus10028439 [exp]	2.4	0.8227
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021655 [exp]	4.6	0.8357
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10039935 [exp]	7.5	0.8152
AT1G64300			Protein kinase family protein ...		Lus10036439 [exp]	8.5	0.7438
AT3G20530			Protein kinase superfamily pro...		Lus10040050 [exp]	13.1	0.7485
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10011716 [exp]	15.1	0.7847
AT2G39260			binding;RNA binding (.1)		Lus10030801 [exp]	16.9	0.7854
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10003799 [exp]	19.8	0.7738
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10001652 [exp]	20.1	0.7562
AT3G57450			unknown protein		Lus10035455 [exp]	20.5	0.7890

Compare expression of checked genes

Lus10016583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.