Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26690 771 / 0 GDPDL3, GPDL2, MRH5, SHV3 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) AT5G55480 744 / 0 GPDL1, GDPDL4, SVL1 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) AT1G66970 743 / 0 GDPDL1, SVL2 Glycerophosphodiester phosphodiesterase \(GDPD\) like 1, SHV3-like 2 (.1.2) AT1G66980 718 / 0 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT3G20520 623 / 0 GDPDL5, SVL3 Glycerophosphodiester phosphodiesterase \(GDPD\) like 5, SHV3-like 3 (.1) AT5G58170 571 / 0 GDPDL7, SVL5 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) AT5G58050 570 / 0 GDPDL6, SVL4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) AT1G74210 86 / 2e-17 AtGDPD5 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1) AT5G08030 82 / 1e-16 AtGDPD6 glycerophosphodiester phosphodiesterase 6, PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014903 [exp] 1363 / 0 AT4G26690 833 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10031604 [exp] 1163 / 0 AT4G26690 817 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10018042 [exp] 1060 / 0 AT5G55480 721 / 0.0 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) Lus10032576 [exp] 1060 / 0 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10043171 [exp] 884 / 0 AT4G26690 665 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10019605 [exp] 455 / 9e-150 AT5G58170 670 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10040037 [exp] 387 / 4e-123 AT1G66980 580 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10040036 [exp] 361 / 3e-115 AT5G58170 520 / 6e-177 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10019606 [exp] 350 / 1e-110 AT5G58170 454 / 9e-151 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G360800 [exp] 847 / 0 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.001G360700 [exp] 830 / 0 AT4G26690 835 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.018G110600 [exp] 572 / 0 AT5G58050 870 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) Potri.006G187600 [exp] 571 / 0 AT5G58170 893 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Potri.015G058400 [exp] 80 / 2e-15 AT1G74210 611 / 0.0 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [flax] [poplar] PLC PF03009 [flax] [poplar] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Lus10016584 pacid=23144008 polypeptide=Lus10016584 locus=Lus10016584.g ID=Lus10016584.BGIv1.0 annot-version=v1.0 ATGTCTGCTCGCCGACTTCATTTTACAGCCTCTCTTCTTCTACTCCTCCCTCTTCTCCTTAACTCCTTTCCAGCTTCCGTCTCGGCTCAGCAGGGATCTA CTCCTTCCTGGAAGACTCTCTCCGGAAATTACCCCTTGGTCGTAGCTCGGGGTGGATTTTCTGGTCTATTCCCGGATTCTTCCTCCATCGCTTACCAGTT TGCGCAACTGATCAGTGTCCCCGATGTTATCCTTTGGTGTGATTTGCAGCTAACCAAAGATCTTTTCGGGATTTGCGCTCCTGACCTCAAGCTTGATAAT TCTACTGATATCAGTAAGTTTTACAAAAACCGTCAGGCTACCCAGGCTACCTACGCAGTCAATGGCGTTAAGCAAGATGGATGGTTTCCATCCGATTTCA CCTTCAAGGAGCTCGCAACTGTTTCCTTAACACAGGGAGTATATTCTCGCAGTCAATATTACGATTCCAATTCGTTCCCAATCCTTACTGTTGATAATGT TGCTGGATTAAAGCCTGCTGGTCTCTGGTTGAATGTTCAGCATGATGCATTCTACACTCAGCAGAATTTGAGTATGAGAAGCTATGTTCTCGCTGCATCT AAAAGAGTGGTTATAAACTACATTTCTTCTCCCGAAGTGGGGTTCTTGAGAAGTATTTCTACACGATTCAACCCAAACATTACCAAACTGTTCTTCCGGT TCAATGGGGAGAAAGAGATTGAGCCTACATTGAACCAGACTTATGGTTCTCTATTGTCAAATTTAACATTTATCAGGACATTTGCCTCTGGAATTATTGT CCCTAAGACTTACATATGGGCTGTGGACGCAAGTCAGTATCTAAGCTCCAGTGGTGGTCCTCTTAATGTCTTGGACGCCCACAAAGCTGGGCTTGAAGTT TTTGCCTCTGACTTTTTCAACGACGCTATTCTGAGTTACAATTACAGTTATGATCCAGTATCTGAATATTTGAACTTTGTGGACAATGGTCAGTTCTCCG TTGATGGTGTATTGTCTGACTACCCAATAACTCCATCTACCGCATTTGTCAAGTTTTTGGTCATCTCCAAAAACGGTGCAAGTGGAGACTATCCTGATTG TACCGATATTGCATACCAAACTGCTATCTCGGACGGTGCGGATGTTATCGATTGTCCAATCCAGATGTCTCAAGATGGAATCCCATTCTGCCAAAGCTCT ATAAATCTTATAGAGACTACAAAAGCTGCTGAAACGTTCAATAATCATTTAACAAGTGTTCCGGAGCTCCTAGGCAATGGAATATATTCCTTTAGTTTAC CATGGACACAGATTCAGAATTTGACTCCGGCAATATCCAATCCATATTCAAGCTTTCAGTTGTTCAGGAATCCAAAGATGAGAAATTCTGGGCAGTTGGT ATCCCTAGCTGACTTCTTGGCATTGGCAAAAGACAATGAGAAATCTCTGTCTGGTGTATTAATTAAGATAGAGAACGCAGCATATCTGATGGAGAAGCAG GGGCTGGCTGTACTTGATGCGGTTGAGAGCGAGTTGGAAAAAGCTGGTTACGGTAATCAGACAGCTCTGAAAGTGATGATTCAGTCCACCAACAGCTCAG TTTTAATGAAGCTCAAGGATAAGAAAAACAAGTACGAGCTGGTGTACCAGGTTGATGAGACAATCGGAAGTGCGGAGAGTTCAGCCATTACAGATATGAA GGAATTTGCTGATTCTGTAATGATCAGCAAGACATCGGTGTTCCCCGTTAATCAATATTTCCTGACTGGAATGACAGATGTTGTATCAAGGCTACAATCG GCTAAACTCCCAGTGTACGTGGAAACCTTCAGCAATGAGTTTGCATCTCAACCATGGGACTTCTTTGCAGATCCTAACGTGGAACTCAACACCTATGTCT CCGGAACCAACATTACAGGTGTTGTTACAGACTTTCCCAAGACATCTGCCAGATTCAAAAAGAACCTCTGTTCTGGTAAAGGCAACAATACCCCGATTTA CATGGCCCCTGTTCAGGCAGGTAGCCTGCTAGGAGTAATTCCACCCCCATTTTTGCCGCCAGCTCAAGCTCCAAGCCCGCCTCTAACTGAGAACGATATT GCGGAGGGGCCTTTGCCTGCTGTTGGAGAGAAACCTACGACTCCTACTCCCCCGGGATCGGGTACACCACCAAGTCCATCAAATGGGGAGCCAAAGGTGG GATCCCGTACCACAGTTTGGGGTGTGGCTATGCTGCTTTTCACATCAGTTTTGTTGGTTTGA
AA sequence Show only first row Show all	>Lus10016584 pacid=23144008 polypeptide=Lus10016584 locus=Lus10016584.g ID=Lus10016584.BGIv1.0 annot-version=v1.0 MSARRLHFTASLLLLLPLLLNSFPASVSAQQGSTPSWKTLSGNYPLVVARGGFSGLFPDSSSIAYQFAQLISVPDVILWCDLQLTKDLFGICAPDLKLDN STDISKFYKNRQATQATYAVNGVKQDGWFPSDFTFKELATVSLTQGVYSRSQYYDSNSFPILTVDNVAGLKPAGLWLNVQHDAFYTQQNLSMRSYVLAAS KRVVINYISSPEVGFLRSISTRFNPNITKLFFRFNGEKEIEPTLNQTYGSLLSNLTFIRTFASGIIVPKTYIWAVDASQYLSSSGGPLNVLDAHKAGLEV FASDFFNDAILSYNYSYDPVSEYLNFVDNGQFSVDGVLSDYPITPSTAFVKFLVISKNGASGDYPDCTDIAYQTAISDGADVIDCPIQMSQDGIPFCQSS INLIETTKAAETFNNHLTSVPELLGNGIYSFSLPWTQIQNLTPAISNPYSSFQLFRNPKMRNSGQLVSLADFLALAKDNEKSLSGVLIKIENAAYLMEKQ GLAVLDAVESELEKAGYGNQTALKVMIQSTNSSVLMKLKDKKNKYELVYQVDETIGSAESSAITDMKEFADSVMISKTSVFPVNQYFLTGMTDVVSRLQS AKLPVYVETFSNEFASQPWDFFADPNVELNTYVSGTNITGVVTDFPKTSARFKKNLCSGKGNNTPIYMAPVQAGSLLGVIPPPFLPPAQAPSPPLTENDI AEGPLPAVGEKPTTPTPPGSGTPPSPSNGEPKVGSRTTVWGVAMLLFTSVLLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10016584 [exp]	0	1
AT3G54120			Reticulon family protein (.1)		Lus10035537 [exp]	1.4	0.8157
AT3G02645			Plant protein of unknown funct...		Lus10022538 [exp]	2.4	0.7711
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10003549 [exp]	4.0	0.8078
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10033902 [exp]	5.5	0.7905
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10005649 [exp]	7.2	0.7873
AT1G21910	AP2_ERF	DREB26	dehydration response element-b...		Lus10028032 [exp]	7.5	0.7520
AT3G54120			Reticulon family protein (.1)		Lus10027756 [exp]	8.8	0.7297
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Lus10003926 [exp]	8.9	0.7541
AT3G19680			Protein of unknown function (D...		Lus10012451 [exp]	13.1	0.7546
AT5G11000			Plant protein of unknown funct...		Lus10005342 [exp]	14.0	0.7523

Compare expression of checked genes

Lus10016584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.