Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55500 612 / 0 ATXYLT "beta-1,2-xylosyltransferase", ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE, beta-1,2-xylosyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014902 [exp] 390 / 5e-134 AT5G55500 254 / 2e-81 "beta-1,2-xylosyltransferase", ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE, beta-1,2-xylosyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G360600 [exp] 700 / 0 AT5G55500 600 / 0.0 "beta-1,2-xylosyltransferase", ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE, beta-1,2-xylosyltransferase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016585 pacid=23144009 polypeptide=Lus10016585 locus=Lus10016585.g ID=Lus10016585.BGIv1.0 annot-version=v1.0 ATGAGCCGAGGTCAATCCAAGCTCCTCAAGATCTTGATTTCCCTTTTCGCTCTTAACTCCATCACCATCTTCCTCTACTTCTCCTTCCACCACCACCGCC TCCCTCCGGCTCTCCCTTTCTCCGACCTCCTCCCTCTCATCTCCAACCGTCACTTCCTCCACAACCCCACCCTTCCTTACACGCCCCCGTCTAACAGTAA CTCCACTCCTCAGAGTTACCTCAAGCCATGGCCCATCCTCCCTTCTTACCTCCCTTGGACTCGCAATCCTAACCCCGCCGATTTCCGCTCCTGCGAGGCT TACTTCGGTAACGGCTTCACCCACCGCGTCGATGTTCTCCCGCCCGTTACCGATACCCGTGGGTGGTTCCGCTGCTTCTTCAGCGAGACGCTGCTCAGCT CGGTCTGCGAAGGTGGCGGGATTCGGATGCTGCCGGATAAGATATTCATGTCAAGGGGTGGGGAGACGCTTAAGGAGGTCATCGGCCGTGACGAGGAGGA TGAGATGCCGATTTTTCAGAGCGGTGCCTTTCAGGTCTTGGGGTCGCAGAGCAGGACGATTAGGAGGATAAGGAGGAATCAGAAGCTTGTGAATGACAAC TTTCTAGGTCAGTACCTGCCCGCGGGGGAAATCGGGAGGCATACGATGCGTCAGCTTGTTAGCTCAATTGAAGTAGTGGATGATAGGGAGTTCCAGTGTG ATCAGTGGATTGAAGAGCCGACTTTGCTTGTCACCCGATTTGAGTACGCAAACCTTTTCCACACTGTAACTGATTGGTACAGCTCGTATGTAGCTTCGAA AGTCACAGATTTGCCTTACCGGCCTCATTTGGTTTTCGTGGACGGCCATTGTAGAGCACCTTTAGAAGAAACTTGGAATGCTCTGTTTTCTAGCATTATG TACGCAAAAAACTTCAGTGGCTCGGTTTGTTTTCGTCATGTTGTGCTTGTTCCATTGGGATATGAAACTGCTCTCTTCAGGGGCCTAAATGAAGATATAT TTTGTTATGGAGCCCCTGCGCCAGAACTTTGGAAAAACCCCGATGTCAAGAAGACTGCAAGATTGTCCGAGTTTGGAGAAATGATTAGAGCAGCGTTTCA CTTCACTGTCAATAGGCATGGCGCTGAAAAGCCAGCTTGGGGTCACAACGTCCTTTTTGTAAGAAGAGAGGATTACTTGGCACATCCACGGCACGATGGC AAGGTTCAATCAAGACTAAGCAATGAAGAAGAGGTGTTTGATGCGGTTCTGAAATGGGCATCTGAGCATAAGGAATGTAGAGTGAACGTGGTCAATGGAT TATTTGCGCACACGGGAATGAAGGAGCAAGTGAAAGCCATTCAAGAGGCTTCAGTTATCATCGGAGCTCATGGGGCAGGCCTAACTCACATAGTATCGGC AACACCAAAAACAGTAATTTTGGAGATTGTCAGTGCTGAGTTCAGACGCCCGCATTTTCAGTTGATTGCGAAGTGGAAAGGGCTAGAGTACCACGCCATA TATCTGGATGAATCTCATGCGGATCCCGTGGTTGTCATCAGCAGGTTAGGGAGGATAATGAAAAGCCTTGAATGCTGA
AA sequence Show only first row Show all	>Lus10016585 pacid=23144009 polypeptide=Lus10016585 locus=Lus10016585.g ID=Lus10016585.BGIv1.0 annot-version=v1.0 MSRGQSKLLKILISLFALNSITIFLYFSFHHHRLPPALPFSDLLPLISNRHFLHNPTLPYTPPSNSNSTPQSYLKPWPILPSYLPWTRNPNPADFRSCEA YFGNGFTHRVDVLPPVTDTRGWFRCFFSETLLSSVCEGGGIRMLPDKIFMSRGGETLKEVIGRDEEDEMPIFQSGAFQVLGSQSRTIRRIRRNQKLVNDN FLGQYLPAGEIGRHTMRQLVSSIEVVDDREFQCDQWIEEPTLLVTRFEYANLFHTVTDWYSSYVASKVTDLPYRPHLVFVDGHCRAPLEETWNALFSSIM YAKNFSGSVCFRHVVLVPLGYETALFRGLNEDIFCYGAPAPELWKNPDVKKTARLSEFGEMIRAAFHFTVNRHGAEKPAWGHNVLFVRREDYLAHPRHDG KVQSRLSNEEEVFDAVLKWASEHKECRVNVVNGLFAHTGMKEQVKAIQEASVIIGAHGAGLTHIVSATPKTVILEIVSAEFRRPHFQLIAKWKGLEYHAI YLDESHADPVVVISRLGRIMKSLEC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55500		ATXYLT	"beta-1,2-xylosyltransferase",...		Lus10016585 [exp]	0	1
AT1G69220		SIK1	Protein kinase superfamily pro...		Lus10037070 [exp]	1.0	0.8557
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10020512 [exp]	2.4	0.8398
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10000883 [exp]	20.8	0.8036
AT5G15400			U-box domain-containing protei...		Lus10005222 [exp]	23.9	0.7931
AT3G53390			Transducin/WD40 repeat-like su...		Lus10019930 [exp]	31.7	0.8187
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Lus10010161 [exp]	44.7	0.7768
AT5G14540			Protein of unknown function (D...		Lus10032138 [exp]	51.8	0.7995
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10006574 [exp]	57.2	0.7871
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10008339 [exp]	66.2	0.7891
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10021625 [exp]	68.6	0.7245

Compare expression of checked genes

Lus10016585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.