Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64350 189 / 2e-62 FKP12, ATFKBP12, FKBP12 ARABIDOPSIS THALIANA FK506-BINDING PROTEIN 12, FK506-binding protein 12 (.1) AT3G55520 72 / 2e-15 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G48570 70 / 5e-14 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25230 67 / 6e-13 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT4G25340 67 / 7e-13 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2) AT5G45680 64 / 1e-12 ATFKBP13 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) AT5G05420 61 / 6e-12 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G48580 55 / 1e-09 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1) AT3G25220 54 / 4e-09 FKBP15-1 FK506-binding protein 15 kD-1 (.1) ATMG00310 53 / 5e-09 ATMG00310.1, ORF154 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003760 [exp] 224 / 3e-76 AT5G64350 185 / 2e-62 ARABIDOPSIS THALIANA FK506-BINDING PROTEIN 12, FK506-binding protein 12 (.1) Lus10003171 [exp] 80 / 2e-17 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10004714 [exp] 75 / 1e-16 AT3G55520 265 / 3e-91 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10040280 [exp] 74 / 2e-16 AT3G55520 263 / 1e-90 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10002338 [exp] 77 / 3e-16 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10038216 [exp] 71 / 3e-14 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10031700 [exp] 71 / 4e-14 AT4G25340 324 / 3e-105 FK506 BINDING PROTEIN 53 (.1.2) Lus10025888 [exp] 71 / 4e-14 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10031121 [exp] 69 / 1e-13 AT4G25340 335 / 3e-110 FK506 BINDING PROTEIN 53 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G113100 [exp] 195 / 1e-64 AT5G64350 201 / 1e-68 ARABIDOPSIS THALIANA FK506-BINDING PROTEIN 12, FK506-binding protein 12 (.1) Potri.014G149400 [exp] 78 / 7e-17 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.006G033400 [exp] 76 / 3e-16 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248300 [exp] 76 / 5e-16 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.012G129200 [exp] 72 / 1e-14 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.010G201600 [exp] 69 / 2e-14 AT3G55520 219 / 2e-73 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.008G057900 [exp] 67 / 9e-14 AT3G55520 236 / 7e-80 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.015G130900 [exp] 68 / 2e-13 AT4G25340 204 / 1e-59 FK506 BINDING PROTEIN 53 (.1.2) Potri.001G075500 [exp] 60 / 6e-11 AT5G45680 253 / 7e-86 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Potri.016G096600 [exp] 56 / 1e-09 AT3G10060 272 / 6e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Lus10016586 pacid=23143945 polypeptide=Lus10016586 locus=Lus10016586.g ID=Lus10016586.BGIv1.0 annot-version=v1.0 ATGGGAGTAGAGAAGGAGATCGTCAGCCCGGGAAACGGTCCCAAACCCTCTCGCGGACAGAAAGTCACCGTTCATTGCACCGGCTTTGGGAAAAACGGTG ATCTATCTGAAAAGTTCTGGAGCACCAAGGACCCTGGGCAGCAACCTTTCTCTTTCAATATTGGCAAGGGAAGCGTCATTAAAGGATGGGATGAAGGTGT CATGGGAATGCAAGTGGGAGAAGTCGCTCGTTTACGGTGCTCCCCAGACTACGCTTATGGAGCTAATGGATTTGGAGCATGGGGAATCCTGCCCAATTCA ACTCTGGTTTTTGAAATTGAAGTCCTGAGCTTAGATTTATGGGGACGAGTGCTGAAAGCCAGATATTTCCCTAAATCCACCTTCATGGAAGAAAAGCTGG GAGGAAGGCCGTACTGGATCTGGTCCAGCCTGATTAAAGCCAGGGACCTGCTAAGGATGGATGCCTTCATGGCGGTGGGGAATGGAACCTCATTTCGCAT AGCATGCGACCCGTGGATCCCATCCTCTAATGTGATGACCCTGCATATCCCCTTTGGCGGTGGTCAATGGGCCTCAAGACAAATGGCCATGGGCCTGTGA
AA sequence Show only first row Show all	>Lus10016586 pacid=23143945 polypeptide=Lus10016586 locus=Lus10016586.g ID=Lus10016586.BGIv1.0 annot-version=v1.0 MGVEKEIVSPGNGPKPSRGQKVTVHCTGFGKNGDLSEKFWSTKDPGQQPFSFNIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGANGFGAWGILPNS TLVFEIEVLSLDLWGRVLKARYFPKSTFMEEKLGGRPYWIWSSLIKARDLLRMDAFMAVGNGTSFRIACDPWIPSSNVMTLHIPFGGGQWASRQMAMGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64350		FKP12, ATFKBP12...	ARABIDOPSIS THALIANA FK506-BIN...		Lus10016586 [exp]	0	1
AT5G40370		GRXC2	glutaredoxin C2, Glutaredoxin ...		Lus10013089 [exp]	2.0	0.8477
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Lus10014144 [exp]	4.2	0.8581
AT2G32520			alpha/beta-Hydrolases superfam...		Lus10035287 [exp]	5.7	0.8073
AT1G29270			unknown protein		Lus10007304 [exp]	8.9	0.8150
AT2G40435			unknown protein		Lus10029251 [exp]	9.5	0.8199
AT1G13380			Protein of unknown function (D...		Lus10034324 [exp]	10.0	0.7857
AT5G49550		BLOS2	BLOC subunit 2, unknown protei...		Lus10019163 [exp]	11.7	0.7815
AT5G01650			Tautomerase/MIF superfamily pr...		Lus10022681 [exp]	12.5	0.8040
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10027365 [exp]	15.4	0.7945
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10006743 [exp]	15.7	0.7615

Compare expression of checked genes

Lus10016586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.