Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59240 224 / 2e-73 Ribosomal protein S8e family protein (.1) AT5G20290 210 / 8e-68 Ribosomal protein S8e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025887 [exp] 229 / 3e-75 AT5G59240 341 / 2e-120 Ribosomal protein S8e family protein (.1) Lus10003171 [exp] 235 / 8e-72 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10002338 [exp] 232 / 2e-70 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10003761 [exp] 199 / 8e-64 AT5G59240 277 / 8e-96 Ribosomal protein S8e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G110000 [exp] 238 / 8e-79 AT5G59240 317 / 2e-111 Ribosomal protein S8e family protein (.1) Potri.001G262100 [exp] 231 / 3e-76 AT5G59240 302 / 2e-105 Ribosomal protein S8e family protein (.1) Potri.009G056900 [exp] 228 / 5e-75 AT5G59240 302 / 3e-105 Ribosomal protein S8e family protein (.1) Potri.001G360500 [exp] 227 / 1e-74 AT5G59240 295 / 3e-102 Ribosomal protein S8e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01201 [flax] [poplar] Ribosomal_S8e Ribosomal protein S8e
Representative CDS sequence Show only first row Show all	>Lus10016587 pacid=23143928 polypeptide=Lus10016587 locus=Lus10016587.g ID=Lus10016587.BGIv1.0 annot-version=v1.0 ATGGGAAGTGGTGACGAGAAAGGACGAAACTTTACCAAGAGACGAAGCATTTCTGCTTCAGGGTTTCAACAACTAGCCTTGGTGCCATCGTCCACAAAGG ACAGCAGTATAAGTAGTGAAGCTTCAGCCTTGGCCATATTTTTCTCTCTTCCGCTCCAAGGCTGCTGCTGCTATCCTGAAGTCCGAAGTAGAGCTTCGAC TTGTCTTTCTGCGAAGATGGGGATATCTCGTGATTCGATGCACAAGAGGCGTGCCACCGGAGGCAAAAAGAAGGCCTGGAGAAAGAAGAGAAAATATGAG CTGGGAAGGCAACCTGCAAACACAAAACTATCGAGCAATAAGACAGTTAGGAGAGTTAGGGTTCGAGGTGGGAATGTGAAGTGGCGTGCGTTGAGGCTTG ACTCAGGAAGCTTCTCATGGGGTAGTGAGGCAGAGTCAAGGAAGACGAGACTTCTTGATGTTGTATACAATGCATCTAACAATGAGTTGGTCCGTACCCA GACTTTGGTGAAGGGTGCTATTGTTCAGGTTGATGCTGCACCTTTTAAGCAGTGGTATCTCAATCACTATGGAGTTGACATTGGTCGCAAGAAGAAAAAT CCCGCCAAGAAGGAAGGAGAGGAAGTTGAAGCTGCTGCTGCTACTGCTACTGAAGAAGCAAAGAAAAGCAGTCACGTGACGAGAAAGCTGGAGAAGAGGC AGCAGACAAGGCAGCTTGATCCACATATTGAGGAACAGTTCAGTGGTGGACGATTATACATCTTGGAGGGCAAAGAACTGGAGTTCTACATGAAAAAGTT GCAGAAGAAGAAGGGCAAGGGAGCTGGAGCTGCCTAG
AA sequence Show only first row Show all	>Lus10016587 pacid=23143928 polypeptide=Lus10016587 locus=Lus10016587.g ID=Lus10016587.BGIv1.0 annot-version=v1.0 MGSGDEKGRNFTKRRSISASGFQQLALVPSSTKDSSISSEASALAIFFSLPLQGCCCYPEVRSRASTCLSAKMGISRDSMHKRRATGGKKKAWRKKRKYE LGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDSGSFSWGSEAESRKTRLLDVVYNASNNELVRTQTLVKGAIVQVDAAPFKQWYLNHYGVDIGRKKKN PAKKEGEEVEAAAATATEEAKKSSHVTRKLEKRQQTRQLDPHIEEQFSGGRLYILEGKELEFYMKKLQKKKGKGAGAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59240			Ribosomal protein S8e family p...		Lus10016587 [exp]	0	1
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035740 [exp]	2.8	0.8430
AT3G10530			Transducin/WD40 repeat-like su...		Lus10037324 [exp]	4.6	0.8391
AT1G80750			Ribosomal protein L30/L7 famil...		Lus10040040 [exp]	15.7	0.8415
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10036655 [exp]	16.0	0.8262
AT1G15420			unknown protein		Lus10030351 [exp]	19.2	0.8297
AT5G63000			Mitochondrial import inner mem...		Lus10027691 [exp]	20.2	0.7930
AT5G18620		CHR17	chromatin remodeling factor17 ...		Lus10012813 [exp]	21.5	0.8045
AT4G17190		FPS2	farnesyl diphosphate synthase ...		Lus10022545 [exp]	24.5	0.8186
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	25.0	0.7989
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Lus10029795 [exp]	26.1	0.7546

Compare expression of checked genes

Lus10016587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.