Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50575 329 / 4e-113 Putative lysine decarboxylase family protein (.1) AT3G53450 48 / 2e-06 LOG4 LONELY GUY 4, Putative lysine decarboxylase family protein (.1) AT2G37210 47 / 5e-06 LOG3 LONELY GUY 3, lysine decarboxylase family protein (.1.2) AT5G06300 46 / 1e-05 LOG7 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) AT2G28305 45 / 2e-05 ATLOG1 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) AT2G35990 45 / 3e-05 LOG2 LONELY GUY 2, Putative lysine decarboxylase family protein (.1.2.3) AT4G35190 44 / 4e-05 LOG5 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) AT5G03270 43 / 9e-05 LOG6 LONELY GUY 6, lysine decarboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003762 [exp] 431 / 5e-154 AT1G50575 285 / 7e-97 Putative lysine decarboxylase family protein (.1) Lus10022638 [exp] 49 / 1e-06 AT4G35190 365 / 2e-129 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10003335 [exp] 49 / 1e-06 AT4G35190 359 / 2e-127 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10026513 [exp] 48 / 3e-06 AT2G37210 394 / 1e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10021462 [exp] 47 / 6e-06 AT2G28305 386 / 1e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10016096 [exp] 47 / 7e-06 AT2G28305 384 / 7e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10002226 [exp] 46 / 1e-05 AT2G37210 379 / 2e-135 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10012436 [exp] 45 / 2e-05 AT5G06300 332 / 7e-117 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Lus10004222 [exp] 45 / 2e-05 AT5G06300 293 / 1e-102 LONELY GUY 7, Putative lysine decarboxylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G180300 [exp] 376 / 1e-131 AT1G50575 361 / 1e-125 Putative lysine decarboxylase family protein (.1) Potri.005G237600 [exp] 47 / 4e-06 AT5G06300 338 / 2e-119 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Potri.016G072000 [exp] 47 / 4e-06 AT5G06300 323 / 1e-113 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Potri.006G127400 [exp] 47 / 5e-06 AT2G37210 396 / 3e-142 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.006G204800 [exp] 46 / 1e-05 AT5G06300 316 / 9e-111 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Potri.002G024000 [exp] 46 / 1e-05 AT2G37210 310 / 2e-108 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.016G090500 [exp] 45 / 1e-05 AT2G37210 392 / 8e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.009G010800 [exp] 45 / 2e-05 AT2G28305 359 / 8e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.004G212200 [exp] 45 / 2e-05 AT2G28305 361 / 1e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.002G012500 [exp] 44 / 7e-05 AT4G35190 300 / 5e-104 LONELY GUY 5, Putative lysine decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0349 [flax] [poplar] SLOG PF03641 [flax] [poplar] Lysine_decarbox Possible lysine decarboxylase
Representative CDS sequence Show only first row Show all	>Lus10016588 pacid=23143959 polypeptide=Lus10016588 locus=Lus10016588.g ID=Lus10016588.BGIv1.0 annot-version=v1.0 ATGAGCTTTTCGACAGAGAGCATCTTGGGTTCTTACGTTTTGGCGAGGAAATTCCACGTAGAACGAAGAGAGTTGTTTCAGTCATCGAGTGGAAGATGGA GATTTGGTGTAAATTTCAGCTGTCAGGAACTGAAACCTCGCCGGAGGAAACAATTGATGTGCAACAAAGGTGAACTATCAGTTGATTTTGAAGAGAGGAC GAGTCCCTACGAGATCAGAAAAGAGGTAGAGCGGTGTTACGATCTCATAAAGCGACTTGGAAGGGGAAGTGTATATCTAGGTTCTTCACGAGTGGGACCA GATCATCCACACTACTTGCAAGCATTTGAGCTTGGGAGAGAGGCAAGTCAAATCTTTATGCTAAGGCTGATATCTGCTGTTCATTGTTTTGAGGGTCAAA ACAGCATAATCAATGAATGCGCTGGTCCAGGTCTAATGGATGCTGCTACCAAGGGCGCATTGCAGGCTGGAAAACCTGCTGGTGGGTTTAAGATAGGGAA AGAAGCTGGTGAATGGACATCCTCAAACTTCCATCCTTACCTCCCGCCACAAACCTATCTTACATGCAGGTTCTTCTCTGCGAGAAAACACGGGCTGGTA GATGCTGCAGTCAGGATGAAGGCCTCTGATCGCACTGCTGTAATTGCACTCCCAGGTGGAATTGGTACTCTAGATGAATTGTTTGAGATATTAGCATTGG TTCAGCTGGAAAGGATTGGATCACAATTTCCGGTGCCAATTCTAGTGATGAATTACGACTCTTTTTACAAGAATCTGCTAGAGTTTCTAAATGATTGTGA GTACTGGGGCACTGTTTCAAAAGGAGAGGCTTCATCACTTTGGAGGATATGCCAGAATAACTCGGAAGCTCTGGCTTACTTGGCTGATTTCTACCATCTC GCTTGGGATGGCATATGA
AA sequence Show only first row Show all	>Lus10016588 pacid=23143959 polypeptide=Lus10016588 locus=Lus10016588.g ID=Lus10016588.BGIv1.0 annot-version=v1.0 MSFSTESILGSYVLARKFHVERRELFQSSSGRWRFGVNFSCQELKPRRRKQLMCNKGELSVDFEERTSPYEIRKEVERCYDLIKRLGRGSVYLGSSRVGP DHPHYLQAFELGREASQIFMLRLISAVHCFEGQNSIINECAGPGLMDAATKGALQAGKPAGGFKIGKEAGEWTSSNFHPYLPPQTYLTCRFFSARKHGLV DAAVRMKASDRTAVIALPGGIGTLDELFEILALVQLERIGSQFPVPILVMNYDSFYKNLLEFLNDCEYWGTVSKGEASSLWRICQNNSEALAYLADFYHL AWDGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50575			Putative lysine decarboxylase ...		Lus10016588 [exp]	0	1
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Lus10015657 [exp]	5.4	0.8507
AT5G25800			Polynucleotidyl transferase, r...		Lus10018935 [exp]	5.7	0.8336
AT2G34050			unknown protein		Lus10013954 [exp]	8.8	0.8247
AT5G62980		FOLB2	Dihydroneopterin aldolase (.1)		Lus10021252 [exp]	11.1	0.8286
AT5G11350			DNAse I-like superfamily prote...		Lus10008086 [exp]	12.4	0.8155
AT1G70350			unknown protein		Lus10013008 [exp]	13.0	0.8254
					Lus10006003 [exp]	20.0	0.8162
AT2G25710		HCS1	holocarboxylase synthase 1 (.1...		Lus10025604 [exp]	24.4	0.8136
AT5G51960			unknown protein		Lus10036504 [exp]	24.5	0.8079
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10009404 [exp]	28.4	0.8084

Compare expression of checked genes

Lus10016588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.