Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20150 563 / 0 Kinesin motor family protein (.1) AT3G23670 390 / 4e-118 PAKRP1L ,KINESIN-12B phragmoplast-associated kinesin-related protein, putative (.1.2) AT4G14150 385 / 9e-114 KINESIN-12A, PAKRP1 phragmoplast-associated kinesin-related protein 1 (.1) AT5G55520 305 / 7e-89 unknown protein AT3G19050 294 / 2e-81 POK2 phragmoplast orienting kinesin 2 (.1) AT4G26660 275 / 2e-78 unknown protein AT3G44050 277 / 1e-76 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G17360 273 / 7e-75 POK1 phragmoplast orienting kinesin 1 (.1) AT3G63480 196 / 5e-54 ATP binding microtubule motor family protein (.1.2) AT3G45850 198 / 2e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021969 [exp] 356 / 4e-104 AT3G23670 689 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Lus10027934 [exp] 286 / 4e-79 AT3G19050 1521 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10012048 [exp] 287 / 6e-79 AT3G19050 1758 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10008438 [exp] 283 / 4e-78 AT3G44050 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017113 [exp] 283 / 9e-78 AT3G17360 1085 / 0.0 phragmoplast orienting kinesin 1 (.1) Lus10013377 [exp] 282 / 1e-77 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018341 [exp] 282 / 2e-77 AT3G19050 1074 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10041262 [exp] 249 / 6e-68 AT3G23670 559 / 8e-180 phragmoplast-associated kinesin-related protein, putative (.1.2) Lus10014216 [exp] 197 / 3e-51 AT2G36200 1464 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G360200 [exp] 1052 / 0 AT3G20150 804 / 0.0 Kinesin motor family protein (.1) Potri.014G149000 [exp] 393 / 9e-117 AT3G23670 1426 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.002G235500 [exp] 387 / 2e-114 AT3G23670 1399 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.004G145800 [exp] 300 / 2e-83 AT3G19050 1765 / 0.0 phragmoplast orienting kinesin 2 (.1) Potri.004G193700 [exp] 278 / 5e-77 AT3G44050 1236 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G156000 [exp] 272 / 7e-75 AT3G44050 1231 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G150800 [exp] 199 / 2e-51 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G106000 [exp] 198 / 2e-51 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G233700 [exp] 197 / 2e-51 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G210700 [exp] 197 / 2e-51 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10016589 pacid=23143927 polypeptide=Lus10016589 locus=Lus10016589.g ID=Lus10016589.BGIv1.0 annot-version=v1.0 ATGAGATCCACCACCGAAAGCGGCGGCGACAGCCGCTTCCTTGGAACCATATCGGCCTCCTCAATCCGAAATCTGCTCCCTAGATCCATCTCTTCCAAGA AGAAAACCAAGTCCAAACTCTTCCGCAGCGAAAACGACCACCCCAACGTTAGAATTAGTGACCCACCACTATCTCCTTCACTCCCAAAACCCTGGAAATC ACCTAAATCCCTCGATTCCAACTTTCAGCGTGAAATTTATCCCGCTAGAGAACGTCTCTCTCTCAAGGAGGACTTGGTAACGGAATCAGTGGAGAAGAAG GATTTCCCTGAAGCTTCAGATCCATCTGTGAAGGTTGTGGTGAGAATTAGGGTTCCAAATGACCAGACAAGAGAGTGGAATCGAACAGTAAGGAAGGTTT CTTCAGATTCTATGTCGATGGGTGAAAGAAGTTTCACATTTGACTCAGTTTTGGACTCCAATTCAACTCAGGAAGACGTGTTTCAGGAAGTTGGAATTCC GTTGGTCCAGAGTGCCTTGGCTGGATACAATGCTTCTATTTTGTCTTACGGGCAGACTGGAAGTGGGAAGACCTACACGATGTGGGGTCCTCCAAGCGCC ATGGTTGAAGATCCTTCTCCCAGCAGTCACCAGGGGCTTGTTCCACGGGTTTTCCAAATGTTGTTTGACAAGATCCAGAAAGAGCAAGAGAACTCAGAAG GAAAACATATCAATTATCAGTGCAGATGCTCTTTCCTTGAGATTTACAATGACCAAATAGGCGACTTGCTTGATCCAGTTCAAAGAAACCTTGAGATAAT GGATGATCCCAAGAATGGATTGTACGTTGAGAATTTGACCGAGGAGTATGTGACAAGCTATGAGGATTTATCTCAAATATTAATCAAGGGACTTTCAAAC AGGAAAGTTGGAGCAACAAGCATAAACTCTAAGAGCTCTAGGTCTCATATCGTGTTTACATTCATCATTGAGTCCTGGTGCAAGGGGACTTCATCAACAT GCTTTAGCAGTTCAAAAATCAGCAGAATTAGCTTCGTTGATCTTGCTGGAATGGACAGAAATAAACCTGATGATGCTGGTCCGCAGCTTCTCAGGGAAAG CAAACATGTGAAAAAGTCCCTCTCTCAGCTTGGGCATGTAGTGAGCACTCTTGCCAAAGAAGCTCAACCAGGAAAGTGCACAGATGTTCCTTACGAAGAG TTCTGTTTGACACATTTGCTTCGCGAGTCACTTGGTGGAAATGCAAAACTTACAGTTCTTTGTACCATCTCTCCTGACAATAGGAATGATAGTGAGACAT TGAGAACACTTAGATTTGGACAGCGAATCAAGTCAATTCAGAATAAGCCAGTCATAAATGAAATATCAGAGAATGATGTAAATGATTTGAGTGATCAGAT ACGCCAACTGAAGGAGGAACTGATAAAGGCCAAATATGATTCATGTAAGTCAGCGAGAAGCAAAGGGGGTAGCTTTAGTGGGCGGAATGTGCGTGACAGC TTGAATAGTTTGAGAGTTAGCCTAAACCGCTCCTTAATGTTACCCAAAATTGATATTGATTCTGACGACGAGGTTAACAATGTTGGCGTGGATGATGTAC TGGAACTGCATAATCATCTTAACGAGTTCCGGACCTCAGGGGAGGGGGACTTAACAAGTTTATCCGAGAGCAAGGACTCAATGCATTTCACATCAGTAGA CCAAAGTTTTGAGACTGCCGTGATGAGCGAAGACGAAGTCAATGGTCCGGCTGAACATGAAGAAATGGATTCGTGGAGAAACAAAGTAAATGTTGCATCT GAAGACGAATTTCCAATTAACCTTAACGCCACCAGGGCAGAAGACGCTGCTGCCATCAGGAATAGCATTTCTATCAGCTTGTGCCGCCAGTCTCAAGTTC TCCAAGAGCCAGTGCTGTCAGAATCTCCGAAAATTGGAAATACTAGGAAGAGCATTACAATATCACCCTCAGCATTTTCCTCTAGTCGGAGCAATGTTTC TGAGAGTTCTAACTTCAACTCAATCGCTGCAAGTAAGACACTAAGGAAAAGTGAGCAAATAAGATCATCTCTGCGTTCAAGCAAGATATTAGCAGGTCCC ACTGATTCTCTGGCAGCCAGCCTACAGAAGGGATTGCATATAATTGAACATCACCAACGAGTCTCCCCATCTAACAGATCCTCAGCGTCTTTCTCTTTTG AACACTTTGCATTGACATCAACTGCTTCGGTTCAAAAGTTAGCAGAAGGTTCCCCATCTACAGAAGTGGCATCTGCCTCTTTACTGTGTGCATCCTGTCA GGAGAAAATCATTGTGACAGGTGGGGAAGTCGGGAGTCATAATGAACTTGTCAATGGAACGACTAAGGGTTCAAGCAGTGATATAGTGGAATGTAGCACA AGAGAGAAGGAACTTGAAACTTTATGCAAGGAACAGGAAGCCAAAATTGAGCAGCTAAATCAAATGGTTGAGCAATACAAATATGTGGCAGAACAACAGT CCTCTGGACATGCACTAGTACTGGAGGCACCCAAACATGAGGAATCAGTGGATGACGAAGACAAGACAAATGACGAATGTGAAGTGAAGGAGGTGGTTTT GGATAATGTGGACACAGGTTTTGACACAAGGGAGAAAGAAGAACTCCTATCCGAAATTGAAAGTCTGAAGGCCAAGTTGAGGGTGTATAGTGATGCACCA TCGTCAACGAGGTCTACTGAGGAGCTCAGGTCCTCCTTACTGGCAAGATCCGTTCTACTGAAGAGCATAGACATTCGGAACAACTCTGAAGAACTGGAGA AAGAAAGGGAGAGGTGGACAGAAATAGAGAGTGGCTGGATATCTCTAACCGACGAGCTGAGGATTGAAATTGAGTCCAGCCGGCGGCATGCAGAGAAAGT GGAAATGGAACTAAGACTGGAGAAGGCAGTTACGGAGGAGCTGGACGATGCTCTCCACAGGGCTATGGTTGGACATGCCAGGATGGTGGAACACTATGCT GATCTACAGGAAAAGCACAATGACTTGGTTGAAAAGCACAAAGCAATCTTAGAAGGAATAGCAGAGGTGAAGAGGGCAGCGGCAAAAGCAGGAAAGAAAG GCGGTAATCGATTTGCGAAGTCGCTTGCTGCAGAACTTTCAAACGTGAGGGTGGAAAGAGAGAAGGAGAGGCAGTTGTTGAGGAAGGAGAACAAGAGCCT GAAACTGCAGCTAAGGGATACTGCTGAAGCTGTACATGCGGCAGGAGAGCTCCTTGTGAGGCTCAAGGAAGCAGAGCAAGCTGCTTCACTTGCAGAGGAG AAATTGAGCAATGTAGATGAAGAGAATGAGAAGTTGAGGAAGCAGATGGAGAAGCAGAAGCGGAAACACAAGATGGAAATGGTGACAATGAAACAGTATC TGGCAGACAGCAGGTTGCCTCAATCAGCACTGCGGAAGCCGGCAATGTACGATGAGGCTGAGGATTCAGAATTGCCACAGAGTACAATCCCATATGATGA TCAAGCTTGGAGAGCTGAATTTGGAGCCATATATAATAATCATCACTACTGCAACTGA
AA sequence Show only first row Show all	>Lus10016589 pacid=23143927 polypeptide=Lus10016589 locus=Lus10016589.g ID=Lus10016589.BGIv1.0 annot-version=v1.0 MRSTTESGGDSRFLGTISASSIRNLLPRSISSKKKTKSKLFRSENDHPNVRISDPPLSPSLPKPWKSPKSLDSNFQREIYPARERLSLKEDLVTESVEKK DFPEASDPSVKVVVRIRVPNDQTREWNRTVRKVSSDSMSMGERSFTFDSVLDSNSTQEDVFQEVGIPLVQSALAGYNASILSYGQTGSGKTYTMWGPPSA MVEDPSPSSHQGLVPRVFQMLFDKIQKEQENSEGKHINYQCRCSFLEIYNDQIGDLLDPVQRNLEIMDDPKNGLYVENLTEEYVTSYEDLSQILIKGLSN RKVGATSINSKSSRSHIVFTFIIESWCKGTSSTCFSSSKISRISFVDLAGMDRNKPDDAGPQLLRESKHVKKSLSQLGHVVSTLAKEAQPGKCTDVPYEE FCLTHLLRESLGGNAKLTVLCTISPDNRNDSETLRTLRFGQRIKSIQNKPVINEISENDVNDLSDQIRQLKEELIKAKYDSCKSARSKGGSFSGRNVRDS LNSLRVSLNRSLMLPKIDIDSDDEVNNVGVDDVLELHNHLNEFRTSGEGDLTSLSESKDSMHFTSVDQSFETAVMSEDEVNGPAEHEEMDSWRNKVNVAS EDEFPINLNATRAEDAAAIRNSISISLCRQSQVLQEPVLSESPKIGNTRKSITISPSAFSSSRSNVSESSNFNSIAASKTLRKSEQIRSSLRSSKILAGP TDSLAASLQKGLHIIEHHQRVSPSNRSSASFSFEHFALTSTASVQKLAEGSPSTEVASASLLCASCQEKIIVTGGEVGSHNELVNGTTKGSSSDIVECST REKELETLCKEQEAKIEQLNQMVEQYKYVAEQQSSGHALVLEAPKHEESVDDEDKTNDECEVKEVVLDNVDTGFDTREKEELLSEIESLKAKLRVYSDAP SSTRSTEELRSSLLARSVLLKSIDIRNNSEELEKERERWTEIESGWISLTDELRIEIESSRRHAEKVEMELRLEKAVTEELDDALHRAMVGHARMVEHYA DLQEKHNDLVEKHKAILEGIAEVKRAAAKAGKKGGNRFAKSLAAELSNVRVEREKERQLLRKENKSLKLQLRDTAEAVHAAGELLVRLKEAEQAASLAEE KLSNVDEENEKLRKQMEKQKRKHKMEMVTMKQYLADSRLPQSALRKPAMYDEAEDSELPQSTIPYDDQAWRAEFGAIYNNHHYCN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20150			Kinesin motor family protein (...		Lus10016589 [exp]	0	1
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Lus10012799 [exp]	1.4	0.9822
AT5G17160			unknown protein		Lus10038036 [exp]	1.7	0.9799
AT5G27550			P-loop containing nucleoside t...		Lus10004487 [exp]	2.8	0.9816
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10012261 [exp]	2.8	0.9747
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10014235 [exp]	3.5	0.9715
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10009434 [exp]	5.2	0.9658
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Lus10010024 [exp]	5.5	0.9721
AT5G60930			P-loop containing nucleoside t...		Lus10000392 [exp]	6.7	0.9597
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10029700 [exp]	7.5	0.9679
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10022679 [exp]	10.0	0.9652

Compare expression of checked genes

Lus10016589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.