Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26730 192 / 3e-54 Leucine-rich repeat protein kinase family protein (.1) AT1G48480 191 / 6e-54 RKL1 receptor-like kinase 1 (.1) AT2G36570 191 / 8e-54 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 188 / 1e-52 RLK902 receptor-like kinase 902 (.1) AT5G05160 186 / 8e-52 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT4G23740 181 / 4e-50 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 180 / 4e-50 Leucine-rich repeat protein kinase family protein (.1) AT5G41680 171 / 7e-49 Protein kinase superfamily protein (.1.2) AT5G16590 176 / 2e-48 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT3G08680 175 / 3e-48 Leucine-rich repeat protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002299 [exp] 191 / 8e-57 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1) Lus10017756 [exp] 195 / 3e-55 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031909 [exp] 189 / 1e-54 AT1G48480 441 / 2e-150 receptor-like kinase 1 (.1) Lus10032162 [exp] 192 / 6e-54 AT2G26730 321 / 1e-100 Leucine-rich repeat protein kinase family protein (.1) Lus10017996 [exp] 191 / 2e-53 AT1G48480 772 / 0.0 receptor-like kinase 1 (.1) Lus10004040 [exp] 190 / 2e-53 AT1G48480 694 / 0.0 receptor-like kinase 1 (.1) Lus10002360 [exp] 190 / 3e-53 AT2G26730 337 / 1e-106 Leucine-rich repeat protein kinase family protein (.1) Lus10042135 [exp] 189 / 3e-53 AT2G26730 335 / 4e-106 Leucine-rich repeat protein kinase family protein (.1) Lus10014525 [exp] 187 / 4e-52 AT2G26730 321 / 2e-100 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G088000 [exp] 417 / 1e-140 AT3G08680 238 / 6e-70 Leucine-rich repeat protein kinase family protein (.1.2) Potri.015G073500 [exp] 211 / 3e-61 AT2G26730 341 / 1e-108 Leucine-rich repeat protein kinase family protein (.1) Potri.006G117200 [exp] 199 / 1e-56 AT2G36570 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G078100 [exp] 197 / 3e-56 AT2G26730 215 / 3e-61 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044600 [exp] 197 / 3e-56 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1) Potri.015G035500 [exp] 191 / 8e-54 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1) Potri.004G086100 [exp] 189 / 2e-53 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.015G023500 [exp] 188 / 1e-52 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 187 / 2e-52 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G062100 [exp] 187 / 4e-52 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10016590 pacid=23143972 polypeptide=Lus10016590 locus=Lus10016590.g ID=Lus10016590.BGIv1.0 annot-version=v1.0 ATGCGGTTCTCCAGGGAAGTTTTTGTGTTGTTTGCAAACATCCTGATCGCAACTTGTCTTGCAGGTGACTCTGAAGCTGAACCTGGGAGGCCACCTGTGT TACTTCTATCGAAACGGGCCGTTTTTGAGATATCCAACAACAGATTCAAATCCTCTATACCTCGCATGATGTTGGAATCAAGAAGCTTGTCACAGGCACA GGCTTCCTGGAGCCCTGCGTCTCAGCCTCCACCAAATGTGGTTTCTTCTTCTTCTCCGGGCGATTTACTTGAGAAGATCCTGCCAGTGATTCTTGGAATC TCAGTTATAGTGTGCATCTATTTCCTGGCACATTCTGTGAGGAACAGGTTACACGGCATGGCGGCCCAAGACAAGGAAACCCTCAAGACCTCGGCAATGT CGACTCCGCAGAAAAGTAGTCTATCTCCAGGACAAGTAGTGAAGCTGCAGCATGAAGAGATCAGTCGGTCAGAGTTTGTATTCTTTGTTGAAGAGAAGGA AAGGTTCGACTTGGGCGAGCTCCTCGAATCCGCTGCAGATTTACAGAACCAGACCATTTGTAGCAGCCTCTACAAGGTGGTGCTCAAGGACAGTGCTATC TACGCTGTGAAGAGGCTGAAGAAGCTGACAGTCTCCTTCGAAAATTTTGGCAGGACAATGAGGCTGGTTGGCAGCCTCAAGCATCCCAACATTCTTCCTC TCATTGCCTTCAGTTCCAACAATGAGGAAAAGCTCCTCATCTATAAGTACCAAACTAATGGAAGCCTCTCCAGTTTACAACAAGGTAGCATTGATGGAAA GAGGGATTTCCCCTGGAAACTTAGACTTTCCATAGCAAGTGGAATTGCAAAGGGCCTAGGCTGCATCTACCTTCAGAATCCTGACAGTCACGAGCATATC CCACACGGGAATCTGAAGCCTTCAAACATCCTGTTGAGCGAGAATGAGGAACCTTTGATCTGTGAATACGGGTATTCAAAGTATAGAGACCCTAAAATTT CCAAAATGTTCTCCTCCAATGGCTACACAGCACCTGAACAGACGGTATCAGAAAAGGGCGATGTGTACAGCTTTGGGATCATACTTCTGGAGCTGTTGAC AGGGAAAACAGTGGAGACGAGTGGAATCGACCTTCCAAAGTGGGTAAGGTCGATGGTTCGTGAAGAATGGACAGGAGAAGTGTTCGACAGACAGATAACC AACCCTGCGAGAGAGTATGCTTTCCACCTACTTAACATTGCCCTGAAATGTGTTTCTAGCAAGCCTGAGGATCGGCCAACAATTGCAGAGCTCGTTGACA AGTTTGAGGAAGTGTCGAATGAGAACGAAGATGTTTCCATCTCGTCGATGGCTTCCACAGATCAGTTTAGCCCCAAGAGTTGCTGTCTGCTTCACTCAGT TATTCCTGAGGCATGGGATACTCCAGGATCAAATTATTAA
AA sequence Show only first row Show all	>Lus10016590 pacid=23143972 polypeptide=Lus10016590 locus=Lus10016590.g ID=Lus10016590.BGIv1.0 annot-version=v1.0 MRFSREVFVLFANILIATCLAGDSEAEPGRPPVLLLSKRAVFEISNNRFKSSIPRMMLESRSLSQAQASWSPASQPPPNVVSSSSPGDLLEKILPVILGI SVIVCIYFLAHSVRNRLHGMAAQDKETLKTSAMSTPQKSSLSPGQVVKLQHEEISRSEFVFFVEEKERFDLGELLESAADLQNQTICSSLYKVVLKDSAI YAVKRLKKLTVSFENFGRTMRLVGSLKHPNILPLIAFSSNNEEKLLIYKYQTNGSLSSLQQGSIDGKRDFPWKLRLSIASGIAKGLGCIYLQNPDSHEHI PHGNLKPSNILLSENEEPLICEYGYSKYRDPKISKMFSSNGYTAPEQTVSEKGDVYSFGIILLELLTGKTVETSGIDLPKWVRSMVREEWTGEVFDRQIT NPAREYAFHLLNIALKCVSSKPEDRPTIAELVDKFEEVSNENEDVSISSMASTDQFSPKSCCLLHSVIPEAWDTPGSNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36570			Leucine-rich repeat protein ki...		Lus10016590 [exp]	0	1

Compare expression of checked genes

Lus10016590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.