Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55540 960 / 0 LOP1, TRN1 LOPPED 1, tornado 1 (.1) AT1G10510 70 / 8e-12 EMB2004 embryo defective 2004, RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003767 [exp] 452 / 9e-146 AT5G55540 651 / 0.0 LOPPED 1, tornado 1 (.1) Lus10030658 [exp] 53 / 2e-06 AT1G10510 759 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Lus10030829 [exp] 52 / 2e-06 AT1G10510 747 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G361200 [exp] 1138 / 0 AT5G55540 1900 / 0.0 LOPPED 1, tornado 1 (.1) Potri.008G193700 [exp] 66 / 2e-10 AT1G10510 813 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Potri.005G209600 [exp] 46 / 0.0002 AT3G63130 667 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016591 pacid=23143988 polypeptide=Lus10016591 locus=Lus10016591.g ID=Lus10016591.BGIv1.0 annot-version=v1.0 ATGGCATCATCAAACAACAGCTTGGGAGATCTTGAATGGCTTCTCCAAGCAATCAAGTCAGAGAGCATAATCCACCATCTTCACAGCATTTCATTCTACC TCTCTCACCAAACCTCAGGCTGTTTCCAAGAGACTGAGACCTCTCTCAGTGTCAATGTTTCCAAAGACAGCTTCCCACTCTTCTCCCACATCCTATCAGA CCTTGGAACTGGAACACCCACCAACTTAACAAACATAGAGTTCCATCGAGTCGAATGGGAACCGGAACAGCTTCTTTACCTCGGAATCCTCCTGCACAAC AGCTCCACCATCACGCAGCTGGTACTCACAAGGAACAGGTTTACAGCAGAATGTTTGAGCCAGCTATGCGAGATTCTCAAGAGGAATGCAGTAATCAAGG AAATCACGTTTTCGGAGTCGCGAATAGGCTCCACTGGAGCTTCCCTTTTGGCTGATGCACTCAGGGCTAATGACACCTTGGAAGAGTTGCAGATATGGGA TGACTCAATTGGGTCCAAAGGTGCTGAGGAGCTGTCCAACATGATTGAATTGAACTCTACGCTCAAGCTTTTGACAATCTTTGACTCTTATTCCATCATA GCAACTCCACTCATATCAGCTGTTTTGGCAAGGAATAGGGCCATGGAGGTACACATTTGGTGTGGCGGTGATAAAAGCTCCAAGGTGGTGGAGTTTGTTC CAGGTAACAATACCCTCAGAGTCTACAAGTTAGATGTTTCAGGATCATGCAGGGTTGCTTGCTCATTGGGATTGAACTCAACAGTCACGACACTGGACAT GACCGGAGTCAGGCTCAAGTCGAGGTGGGCTAAGGAGTTCCGGTGGGTTTTGGAGCAGAACCGGAGTCTTAGAGAGGTAAGGCTGTCCAAGACTTGCCTT AAAGACAAGGGAGTTGTGTATGTTGCAGCAGGGCTGTTCAAAAACCAGACCTTGCAAAGTTTGTATCTTGATGGGAACTGCTTCAGTGGGGTTGGAGTAG AGAATTTGTTATGCCCTTTGAGCAGATTCTCCTCCCTGCAAATCCAAGCCAACATTAGTCTTAAATCTGTATACTTTGGAGGGAGGAGAACAAAGATTGG AAAGGATGGAGTTACAGCAATCATCCAGATGCTGACAAGTAACGAGACGCTGACAAAGTTTGGGATATATGATGATGAGAGCTTGAAAGCGGATGACATA GTGAGAATCTTGAAGGGGTTGGAAAGAAATGCATGTTTGAGGTACTTGTCTTTGCAAGGCTGCAAAGGGGTTCAAGGAGATTTGGTGCTAAATGCGATAA CTGAGACATTGCAGGTGAATCCTTGGATCGAAGAAATTGATCTTGCAAGAACACCACTGCACATTTCTGGGGATGCTGATTCTATTTACCAAAGACTAGG CCAAAATGATGGTAACAGTATTGAACCAGAAATAGAACCATCAGATGTCAACTTGTTCAAGGACATGCCACTAACCGAGCCCAAGAGCTGCCGTGTTTTC TTTTGTGGCCAAGAATATGCAGGAAAGAGCACACTATGCAATGCAGTATCACAGAACTTCAGCTCTTCAAAGCAGCTTCCTTACATGAGGACCCTTGTGA ACCCTGTTGAACAAGCTGTGACAAGTGGTGGAATGAAGATTAAGACATTTAGAGTTGAAGATACCAAAATATCGATATGGAACCTTGGTGGTCAGCATGA ATTTTACACCTTGCATGATCTCATGTTCCCTGGTCATGGCGCAATACTGGCTGAGCGAGTAAGAGACAAGTTCCGAGGATTTGTAGACTTGCATCCAACT GTGTTCACAGTTGATGGAAGGTCCTCTGCATCAGTTAACAAACTCACTCATCATCTCCGAAAGACAAGCAAGACCATTCTCCAGAGAGTTCCAAGAATCT ACCAGCTTTGCAATGATCTAATTCAGACTCTATCTGACTGGAGGACCGACAACTATAACAAACCAACAATGAGGTGGAAGGAATTTGATGAGCTTTGCCA AGTGAAAGTGCCAGCACTGAGGATTCGGTCAAGACATGATAACAGGGAGAAGGTAGAAATGAAAAGGAAGGCTGTTGCTAGTTGCCTCCATCATATAGGG GAAGTTATTTACTTTGATCAGTTAGGTTTCTTGATCCTAGATTGTGAGTGGTTCTGCTGTGAAGTACTTGGCAAACTCGTAAAACTTGATGTTAAAAAGG CTAGCTCAATGCAGATTGGATTCATCAGCAGAAAAGAATTAGAGAAGGTTCTGAGAGCAACTTTACAAAGTAATATCCCAGGAATGGGTTCAAAGGTATT TGAGAACCTGGAAGCTAATGATTTGGTCAATATGATGCTGAAACTTGAACTGTGCTACAAACAAGATCCAGCAGATCCCAACTCCTTGCTGCTAATTCCT TCAATTCTCGAGGAAGGCAGAGGAAAACCCCAGGTGTGGCAGATCAGTTCACCGGACTGCATCTACGCAGGGCGCCATCTGGAGTGTGATGATTCAAGCC ACATGTTTCTGACTCCAGGCTTCTTTCCTCTTTTACAGGCAAAGACAAAATCAAGCTCTTTTCTTCCTTTCCAAGTTCATCTTCATGATAGAATCATGTC ACTAAGGAATCAATATGGAGGAGCAATTTACAGTCTAGAAAAGTACCTCATTTCAATAAACATCAATGGCATCCACATTAGAGTTGAACTCGGAGGGCAG TTGGGCTATTACATTGACATTCTTGCTTGCTCCACCAAGAACCTCACGGAGACTCTCACAGTCTTCAATCAGCTAATAATCCCAGCAATTCAGAGTCTCT GCCATGGTGTTACCTTGACCGAAAACATCATAAGGCCTGAATGTGTGAAGAATCTGACCCCTCCTCGGCATAGGAAAACACAGCATGTACCTGTTCAGCA GCTGAAGCAAGCCCTTCTCTCAGTTCCTGCAGACGGCATATATGATTATCAGTACACATGGGATCCTGTGTCAGATTCCGGCAGACTGATTCTACGATCC AATTTTGACTTGGCTCGTGATCTTCTATCTGATGATGACTTGAGGGAAGTGTTGCACAGAAGATACCACGATCTGTACAACCTTGCTGTGGAGTTGGACG TTCCACCAGATAGAGCAGACCAAAGTAACGAACTTGGCAATGTTGATCCAAGCTTTGCTGGAATAGCGAAAGGCGTGGAACAAGTGCTGCAACGACTCAA GATTATTGAACAGGAGATAAGAGATCTCAAGCAGGAGATTCAGGGGCTAAGATATTATGAGCACAGACTACTAATTGAGCTTCATCGCAAAGTTAACTAC CTTGTCAACTACAACACCCAGGTTGAAGAGAGGAAAGTACCAAACATGTTCTTCTTTGTCAGGACTGACAACTACTCAAGAAGACTGATCACCAACATGA TTAGCGGGATGAATGCTCTTAGGCTGCACATGCTGTGTGAGTTCAGGCGGGAAATGCATGTTGTTGAAGATCAGATGGGGTGCGAAGTGATGCAGGTTGA TAACAGGGCAGTTCAGTCGTTGGCTCCATATATGAACAAGTTTATGAAGTTGGTGACTTTTGCTCTCAAGATTGGAGCTCACCTTGCAGCTGGAATGGGA GAAATGATACCAGATTTGAGCAGAGAGGTTGCTCATCTTGCTGGCTCTTCACTTACATATGGTGCAGCTGGTGCGCTTGCTGCTGGAGCCGTAGGGGTTG TAGCTATGGGAAGGGCCGCTGAAGGAACGAGGAACAGAAGCAGAACTGCAGCAAGTTCAAGAGATATGCAACAAGACCTCAGAGCAGCACAGCAATGGGT GGTTGATTTCTTAAGGGAACGTCGGTGTTCGACAGGAAAGGACATTGCCGAGAAGTTTGGACTGTGGAGGGTGCGATACAGGGATGATGGCCAGATTGCA TGGGTTTGCAGAAGGCATATGATCACAAGAGCATGTGAAATATTACAAGTACCCATCTGA
AA sequence Show only first row Show all	>Lus10016591 pacid=23143988 polypeptide=Lus10016591 locus=Lus10016591.g ID=Lus10016591.BGIv1.0 annot-version=v1.0 MASSNNSLGDLEWLLQAIKSESIIHHLHSISFYLSHQTSGCFQETETSLSVNVSKDSFPLFSHILSDLGTGTPTNLTNIEFHRVEWEPEQLLYLGILLHN SSTITQLVLTRNRFTAECLSQLCEILKRNAVIKEITFSESRIGSTGASLLADALRANDTLEELQIWDDSIGSKGAEELSNMIELNSTLKLLTIFDSYSII ATPLISAVLARNRAMEVHIWCGGDKSSKVVEFVPGNNTLRVYKLDVSGSCRVACSLGLNSTVTTLDMTGVRLKSRWAKEFRWVLEQNRSLREVRLSKTCL KDKGVVYVAAGLFKNQTLQSLYLDGNCFSGVGVENLLCPLSRFSSLQIQANISLKSVYFGGRRTKIGKDGVTAIIQMLTSNETLTKFGIYDDESLKADDI VRILKGLERNACLRYLSLQGCKGVQGDLVLNAITETLQVNPWIEEIDLARTPLHISGDADSIYQRLGQNDGNSIEPEIEPSDVNLFKDMPLTEPKSCRVF FCGQEYAGKSTLCNAVSQNFSSSKQLPYMRTLVNPVEQAVTSGGMKIKTFRVEDTKISIWNLGGQHEFYTLHDLMFPGHGAILAERVRDKFRGFVDLHPT VFTVDGRSSASVNKLTHHLRKTSKTILQRVPRIYQLCNDLIQTLSDWRTDNYNKPTMRWKEFDELCQVKVPALRIRSRHDNREKVEMKRKAVASCLHHIG EVIYFDQLGFLILDCEWFCCEVLGKLVKLDVKKASSMQIGFISRKELEKVLRATLQSNIPGMGSKVFENLEANDLVNMMLKLELCYKQDPADPNSLLLIP SILEEGRGKPQVWQISSPDCIYAGRHLECDDSSHMFLTPGFFPLLQAKTKSSSFLPFQVHLHDRIMSLRNQYGGAIYSLEKYLISININGIHIRVELGGQ LGYYIDILACSTKNLTETLTVFNQLIIPAIQSLCHGVTLTENIIRPECVKNLTPPRHRKTQHVPVQQLKQALLSVPADGIYDYQYTWDPVSDSGRLILRS NFDLARDLLSDDDLREVLHRRYHDLYNLAVELDVPPDRADQSNELGNVDPSFAGIAKGVEQVLQRLKIIEQEIRDLKQEIQGLRYYEHRLLIELHRKVNY LVNYNTQVEERKVPNMFFFVRTDNYSRRLITNMISGMNALRLHMLCEFRREMHVVEDQMGCEVMQVDNRAVQSLAPYMNKFMKLVTFALKIGAHLAAGMG EMIPDLSREVAHLAGSSLTYGAAGALAAGAVGVVAMGRAAEGTRNRSRTAASSRDMQQDLRAAQQWVVDFLRERRCSTGKDIAEKFGLWRVRYRDDGQIA WVCRRHMITRACEILQVPI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Lus10016591 [exp]	0	1
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Lus10003767 [exp]	1.4	0.9016
AT1G23880			NHL domain-containing protein ...		Lus10039421 [exp]	2.4	0.8884
AT2G19090			Protein of unknown function (D...		Lus10020008 [exp]	3.9	0.8882
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10006011 [exp]	4.5	0.8829
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10040558 [exp]	4.9	0.8774
AT5G62620			Galactosyltransferase family p...		Lus10036685 [exp]	7.3	0.8644
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038381 [exp]	9.5	0.8594
AT2G19090			Protein of unknown function (D...		Lus10020009 [exp]	12.4	0.8414
AT5G19420			Regulator of chromosome conden...		Lus10039525 [exp]	18.6	0.8814
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011585 [exp]	18.7	0.8512

Compare expression of checked genes

Lus10016591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.