Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55530 152 / 3e-43 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G50570 130 / 5e-35 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G12300 92 / 5e-21 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003765 [exp] 326 / 3e-110 AT5G55530 451 / 1e-157 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10032578 [exp] 173 / 2e-51 AT5G55530 395 / 2e-136 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10043169 [exp] 134 / 3e-37 AT5G55530 274 / 4e-90 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10009692 [exp] 91 / 1e-20 AT5G12300 264 / 4e-86 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10036036 [exp] 72 / 6e-14 AT5G12300 192 / 9e-58 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10001346 [exp] 62 / 4e-11 AT5G12300 72 / 9e-15 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009693 [exp] 53 / 4e-09 AT5G12300 71 / 4e-16 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G088400 [exp] 163 / 5e-47 AT5G55530 418 / 9e-145 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Potri.001G361100 [exp] 151 / 1e-42 AT5G55530 431 / 2e-149 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Potri.009G070400 [exp] 101 / 3e-24 AT5G12300 283 / 2e-92 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G275800 [exp] 100 / 1e-23 AT5G12300 285 / 7e-93 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G063900 [exp] 46 / 2e-05 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G124000 [exp] 45 / 5e-05 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10016592 pacid=23143966 polypeptide=Lus10016592 locus=Lus10016592.g ID=Lus10016592.BGIv1.0 annot-version=v1.0 ATGGATTCTCCACAATCTGTTGTCTCGCCATTCAAGACTGCTGAGACGGAGAAACAGCATAAAACTATCGACTATTCTGTTAAGGAAGTTACCGGGAAGG CAACTAATGGAAATTTGGAGCAAGACTTCATTGGTGTGCTTGAGGTTTATGTACATCAAGCTCGTGACATCCATAACATATGCATCTACCACAAACAAGA TGTCTATGCTAAGATCTGCCTTACCAGTGATCCTGACAACACCGTCTCCACAAATACCATCAACGGTGGTGGGAGGAATCCGGTTTTCAATCAGAATCTG CAGATTAATGTCAAGACAGTTGACTGCTCCCTCAAATCTGACAACCATACTAGCAGTACAGACAGGGGGACTAATGCAGTAGAAAGTTTCTCGACTGCTG CAGTTGATTGTATCCGAGCTATTAAGCTCGATTCTCCTCCAAGCAGTGTGTCAACGAATGGAGTGGCATCTCCTTCAAACGGAGTGAGCTCTAACAACTC GGAGGCCCCACTTGCCTCCAAAACTCAGTCTGAAGAACACAACTCCATTTGCAAAGAGTTAAAGAGTGTAGATCATGTGGCTAATGGAGAAACCGATTCC TCAGCTGGCACACCCAAGGAGCAGGAGGAAGTTACAAAAAACCACGTCTTCAATGTGAACTTTGAGCCTGAGCAGAATGTAGTCCAGCAGGACATAGTGG ACATGTACATGAAGAGCATGCAGCAATTCACTGAGTCATTGGCAAAGATGAAGCTTCCTCTGGAAATTGATAATAGCGGACCACCGAGTTCAGGAAGTTC AAACACTGAGCAGAAAACACCCTCATCAACCAAGGCAGGTTCTCGGGTCTTTTACGGGAGCAGGGCTTTCTTCTGA
AA sequence Show only first row Show all	>Lus10016592 pacid=23143966 polypeptide=Lus10016592 locus=Lus10016592.g ID=Lus10016592.BGIv1.0 annot-version=v1.0 MDSPQSVVSPFKTAETEKQHKTIDYSVKEVTGKATNGNLEQDFIGVLEVYVHQARDIHNICIYHKQDVYAKICLTSDPDNTVSTNTINGGGRNPVFNQNL QINVKTVDCSLKSDNHTSSTDRGTNAVESFSTAAVDCIRAIKLDSPPSSVSTNGVASPSNGVSSNNSEAPLASKTQSEEHNSICKELKSVDHVANGETDS SAGTPKEQEEVTKNHVFNVNFEPEQNVVQQDIVDMYMKSMQQFTESLAKMKLPLEIDNSGPPSSGSSNTEQKTPSSTKAGSRVFYGSRAFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55530			Calcium-dependent lipid-bindin...		Lus10016592 [exp]	0	1
AT3G07580			unknown protein		Lus10016076 [exp]	3.0	0.9543
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10004161 [exp]	3.2	0.9338
AT3G21865		PEX22	peroxin 22 (.1)		Lus10039690 [exp]	4.6	0.9289
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10008197 [exp]	6.0	0.9347
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Lus10008988 [exp]	6.6	0.9157
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10027373 [exp]	8.9	0.9176
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10038952 [exp]	9.6	0.9454
AT1G05410			Protein of unknown function (D...		Lus10041201 [exp]	12.6	0.9286
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10027242 [exp]	13.0	0.9319
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10014187 [exp]	15.1	0.9353

Compare expression of checked genes

Lus10016592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.