Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55560 466 / 4e-167 Protein kinase superfamily protein (.1) AT3G48260 377 / 3e-129 WNK3 with no lysine (K) kinase 3 (.1) AT3G18750 356 / 2e-120 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT3G04910 360 / 4e-120 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT3G22420 349 / 1e-117 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT1G49160 347 / 6e-117 WNK7 Protein kinase superfamily protein (.1.2) AT5G28080 340 / 9e-115 WNK9 Protein kinase superfamily protein (.1.2) AT5G58350 335 / 5e-112 ZIK2, WNK4 with no lysine (K) kinase 4 (.1) AT3G51630 333 / 2e-111 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT5G41990 327 / 5e-109 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001165 [exp] 454 / 1e-162 AT5G55560 458 / 5e-164 Protein kinase superfamily protein (.1) Lus10001739 [exp] 446 / 2e-159 AT5G55560 457 / 2e-163 Protein kinase superfamily protein (.1) Lus10017318 [exp] 357 / 3e-120 AT5G41990 589 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10041947 [exp] 354 / 3e-119 AT3G48260 612 / 0.0 with no lysine (K) kinase 3 (.1) Lus10001789 [exp] 352 / 4e-117 AT3G04910 790 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10020236 [exp] 352 / 4e-117 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10003215 [exp] 355 / 5e-117 AT5G41990 585 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10030229 [exp] 352 / 1e-116 AT3G18750 561 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10042223 [exp] 345 / 3e-116 AT5G58350 630 / 0.0 with no lysine (K) kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G164100 [exp] 468 / 4e-168 AT5G55560 466 / 5e-167 Protein kinase superfamily protein (.1) Potri.015G084600 [exp] 365 / 1e-123 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.012G086700 [exp] 363 / 6e-123 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.005G049800 [exp] 353 / 2e-117 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.010G087900 [exp] 353 / 5e-117 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.013G036300 [exp] 352 / 7e-117 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.005G057300 [exp] 346 / 4e-115 AT1G49160 712 / 0.0 Protein kinase superfamily protein (.1.2) Potri.013G155100 [exp] 342 / 2e-114 AT5G58350 689 / 0.0 with no lysine (K) kinase 4 (.1) Potri.008G152300 [exp] 341 / 1e-112 AT3G04910 726 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.019G128600 [exp] 338 / 1e-112 AT5G58350 662 / 0.0 with no lysine (K) kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10016594 pacid=23143960 polypeptide=Lus10016594 locus=Lus10016594.g ID=Lus10016594.BGIv1.0 annot-version=v1.0 ATGCCTAGTGCAGACTCAGACCCTGATCCTTGGGACGAAAGGGAACCATTTGTGGAAGTAGATCCCACCAATCGATATGGCCGGTACAATGAGCTACTTG GAACAGGTGCTGTGAAAAAGGTGTACCGTGCCTTTGATCAGGAAGAAGGAATAGAGGTTGCTTGGAACCAAGTCAAGCTCAGAAACCTATCATACGATCC TTCAACGATCGATAGATTGATGTCTGAGGTTCGGCTACTGAGATCCTTGGCTAACCAGAACATAATATCCTTGTACAAAGTCTGGAAGGATGATGAACAC GGAACTCTGAATTTCATTACGGAGGTATGCACTTCCGGAAACCTGAGGGAGTACAGGAAGAAGCATCGTTACGTTTCGATGAAAGCCCTGAAGAAATGGT CCAAACAAGTTCTGAAAGGATTGGATTATTTGCATACCCATGAACCTTGCGTCATACACAGAGACTTGAACTGTAGCAATCTCTTTGTCAATGGCAATAT CGGCCAGGTAAAGATTGGGGATCTTGGGCTGGCAGCTGTAGTTGGGAAGAGCCATTCAGCACATTCAATACTTGGGACGCCGGAGTTCATGGCACCGGAG CTGTACGAGGAGAATTACACAGAGCTGGTGGACATTTACTCATTCGGGATGTGTGTGCTGGAGATGGCGACGAGAGAGGTTCCGTATAGCGAATGCGACA ATGTAGCAAAGATATACAAGAAGGTGAGTTGTGGGATCAAGCCTCTGGCTTTAGGGAAAGTGAAGGACCCGGAAGTTAAATGTTTCATCCACAAGTGCCT TGTTGAAGCAAAGGCTAGACCCTCTGCATCTCAACTTCTTAGGGATCCTTTCTTTCAAGAAATCAACGAGGATGAAGAAAATGAAGTGTAG
AA sequence Show only first row Show all	>Lus10016594 pacid=23143960 polypeptide=Lus10016594 locus=Lus10016594.g ID=Lus10016594.BGIv1.0 annot-version=v1.0 MPSADSDPDPWDEREPFVEVDPTNRYGRYNELLGTGAVKKVYRAFDQEEGIEVAWNQVKLRNLSYDPSTIDRLMSEVRLLRSLANQNIISLYKVWKDDEH GTLNFITEVCTSGNLREYRKKHRYVSMKALKKWSKQVLKGLDYLHTHEPCVIHRDLNCSNLFVNGNIGQVKIGDLGLAAVVGKSHSAHSILGTPEFMAPE LYEENYTELVDIYSFGMCVLEMATREVPYSECDNVAKIYKKVSCGIKPLALGKVKDPEVKCFIHKCLVEAKARPSASQLLRDPFFQEINEDEENEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55560			Protein kinase superfamily pro...		Lus10016594 [exp]	0	1
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10017668 [exp]	1.4	0.9193
AT5G53110			RING/U-box superfamily protein...		Lus10007845 [exp]	1.4	0.9270
AT1G79910			Regulator of Vps4 activity in ...		Lus10035885 [exp]	4.0	0.8913
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10036539 [exp]	4.6	0.9051
AT3G57120			Protein kinase superfamily pro...		Lus10011518 [exp]	8.1	0.8892
AT5G48060			C2 calcium/lipid-binding plant...		Lus10015710 [exp]	11.2	0.8532
AT5G63710			Leucine-rich repeat protein ki...		Lus10025703 [exp]	12.0	0.9015
AT1G12940		ATNRT2.5	nitrate transporter2.5 (.1)		Lus10013042 [exp]	12.2	0.8732
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Lus10034025 [exp]	12.4	0.8895
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10016595 [exp]	12.5	0.8855

Compare expression of checked genes

Lus10016594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.