Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26640 555 / 0 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT5G56270 288 / 5e-89 WRKY ATWRKY2, WRKY2, WRKY23 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) AT2G03340 271 / 2e-84 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT2G38470 257 / 8e-79 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT1G13960 254 / 1e-77 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT4G26440 251 / 3e-76 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT3G01080 239 / 6e-73 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT2G04880 235 / 4e-71 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT5G07100 226 / 1e-70 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT2G30250 220 / 3e-66 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003769 [exp] 1068 / 0 AT4G26640 524 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10043167 [exp] 602 / 0 AT4G26640 473 / 9e-163 WRKY family transcription factor family protein (.1.2) Lus10032580 [exp] 461 / 2e-159 AT4G26640 369 / 5e-125 WRKY family transcription factor family protein (.1.2) Lus10032887 [exp] 323 / 8e-102 AT5G56270 540 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10027139 [exp] 322 / 2e-101 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10012215 [exp] 285 / 3e-89 AT2G38470 393 / 2e-131 WRKY DNA-binding protein 33 (.1) Lus10026838 [exp] 287 / 4e-88 AT5G56270 298 / 7e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10001265 [exp] 282 / 4e-88 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10042243 [exp] 277 / 1e-86 AT5G07100 323 / 5e-105 WRKY DNA-binding protein 26 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G361600 [exp] 699 / 0 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.011G087900 [exp] 688 / 0 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.011G169300 [exp] 326 / 6e-103 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.001G472800 [exp] 322 / 2e-101 AT5G56270 585 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.013G153400 [exp] 292 / 2e-91 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.004G120800 [exp] 290 / 5e-91 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.019G123500 [exp] 288 / 8e-90 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.013G086000 [exp] 290 / 3e-89 AT5G56270 299 / 3e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.010G163000 [exp] 276 / 2e-86 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.008G091900 [exp] 272 / 1e-84 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10016595 pacid=23143940 polypeptide=Lus10016595 locus=Lus10016595.g ID=Lus10016595.BGIv1.0 annot-version=v1.0 ATGGACACCACTAGTTCTACTACTTCTTCTTCTACACCTGATGCTTCCGACTCCAATGACTTCCGCCTTCCTGCTCCTCCTGCTTCTGCTTGTGATTCCT CCGATCACCGCCCTGGGACTTGTGCTGCTTCTGGCGGAGCTAGGTATAAGCTTATGTCGCCGGCCAAGCTTCCGATCTCCAGGTCTCCTTGCATCACCAT CCCTCCGGGCCTTAGTCCCACTTCCTTTCTCGAGTCCCCTGTCTTGCTCTCCAATGTCAAGGCAGAGCCTTCGCCAACTACGGGTTCCTTTATGAACCCT CAAGCAGCTCATAGCTCTTTCTTGTCTACTCCCTATTCAGCACCTGCGGTTTCATCAGACACCTTTGGACAAAGAGCATCCAGCTTCTTTGAGTTCAGGC CTCCTTCTATTGCAAATATGACTTCTGCAGATATGAACAATCAGAGAACTGATCAATCTGTACGAATCCAAGGCACTTCTCAATCCCAGTTTCAACCATT TTCATCATTGGCTTCACCTAAAGCAGAGATGATAGCCTCCTCAAATGAGTTAAGTCTGACGCCTCGTCACTTGGTTAGTTCTGAGGATACTGGACCAGCT GAAATTGAAACCGATGAATCAAACCAGATAGGAAACTCTAATAGCGGTATTCAGGCCTCACAGTATGATCTTAAAGGAGGAACTGTGAATTCAGCGACAT CAGATGATGGATATAACTGGCGTAAATATGGACAGAAACATGTGAAGGGAAGTGAGTTCCCTCGTAGTTACTACAAATGCACACATCCAAATTGTGAGGT GAAGAAGTTATTTGAGCGCTCTTATGACGGGCAAATAACAGAGATAATCTATAAGGGCACACATGACCATCCAAAACCTCAACCTAGTCGGCGATACACT GCTGGAACTCTTTTGTCTGTCCAAGAAGAAAGATCTGATAAAATATTATCTGGGAGAGATGAGAAGTCATCTGGTGCATACAGTCAATTGTCCAACACCT CAGAACCGAATGGTACTCCTGATCTGTCTCCTGTTACAGCAATTGATGATATCCCAGAAGGTACTGAGGAAGATGATGATCCACTTTCAAAGCGCAGGAG GATGGATATTGGGAGCTTCGATGTTACTCCAGTGGTTAAGCCTATCCGTGAACCACGTGTTGTTGTTCAAACTCTTAGTGAGGTTGATATACTTGATGAT GGGTACAGGTGGCGCAAATATGGGCAAAAGGTGGTGAGAGGAAATCCTAACCCAAGGAGTTACTACAAGTGCACAAATGCTGGATGTCCGGTGAGAAAGC ATGTAGAGAGGGCATCACATGATCCAAAAGCAGTTATAACTACTTACGAAGGGAAACACAACCATGACGTACCCGCAGCAAAGAATAGCAGTCATGAGGC AGCCGCTAATGCTATGAGTGGTCCGTCGAGGTTTAGATCAAACGAAAGCGACACAATCAGCCTTGGTCTCGGAGTTGGGAGGGGTTCTGCTGCCGAACAT GGGCAGAGCAGTGGGTCCAGTTTAAGCAAAGTTGCAAATTACTACGGCATTCTAAACGGTGGGATGAACCAGTATGTGTCGTCTCGACAAGCTCCAAATG AAGGGCACAGTGTTGAACTTGAAGCTCTGAACCATTCATCTTACCCTTACCCACCGAATGTGGGAAGATTATTAACAGGCCCTTGA
AA sequence Show only first row Show all	>Lus10016595 pacid=23143940 polypeptide=Lus10016595 locus=Lus10016595.g ID=Lus10016595.BGIv1.0 annot-version=v1.0 MDTTSSTTSSSTPDASDSNDFRLPAPPASACDSSDHRPGTCAASGGARYKLMSPAKLPISRSPCITIPPGLSPTSFLESPVLLSNVKAEPSPTTGSFMNP QAAHSSFLSTPYSAPAVSSDTFGQRASSFFEFRPPSIANMTSADMNNQRTDQSVRIQGTSQSQFQPFSSLASPKAEMIASSNELSLTPRHLVSSEDTGPA EIETDESNQIGNSNSGIQASQYDLKGGTVNSATSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSYDGQITEIIYKGTHDHPKPQPSRRYT AGTLLSVQEERSDKILSGRDEKSSGAYSQLSNTSEPNGTPDLSPVTAIDDIPEGTEEDDDPLSKRRRMDIGSFDVTPVVKPIREPRVVVQTLSEVDILDD GYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAAKNSSHEAAANAMSGPSRFRSNESDTISLGLGVGRGSAAEH GQSSGSSLSKVANYYGILNGGMNQYVSSRQAPNEGHSVELEALNHSSYPYPPNVGRLLTGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10016595 [exp]	0	1
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10015026 [exp]	2.0	0.9125
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Lus10029506 [exp]	2.8	0.8931
AT1G29390		COR413IM2, COR3...	COLD REGULATED 314 INNER MEMBR...		Lus10015258 [exp]	3.0	0.9049
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10030793 [exp]	4.2	0.8963
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10020814 [exp]	5.8	0.9051
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10038902 [exp]	6.0	0.8916
AT3G48010		ATCNGC16	cyclic nucleotide-gated channe...		Lus10002363 [exp]	8.5	0.8253
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10035131 [exp]	8.8	0.8942
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10014706 [exp]	9.2	0.8781
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10043167 [exp]	9.5	0.8970

Compare expression of checked genes

Lus10016595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.