Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07100 1100 / 0 AtSEC24A, SEC24A, ERMO2 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) AT3G44340 426 / 3e-132 CEF clone eighty-four (.1.2) AT4G32640 411 / 6e-127 Sec23/Sec24 protein transport family protein (.1.2) AT2G27460 87 / 2e-17 sec23/sec24 transport family protein (.1) AT3G23660 61 / 5e-09 Sec23/Sec24 protein transport family protein (.1.2) AT1G05520 55 / 3e-07 Sec23/Sec24 protein transport family protein (.1) AT2G21630 52 / 3e-06 Sec23/Sec24 protein transport family protein (.1) AT4G01810 50 / 1e-05 Sec23/Sec24 protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013101 [exp] 460 / 3e-154 AT3G07100 194 / 6e-55 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Lus10000939 [exp] 400 / 1e-122 AT4G32640 1241 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Lus10004122 [exp] 380 / 3e-115 AT4G32640 1209 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Lus10013100 [exp] 292 / 4e-93 AT3G07100 220 / 5e-67 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Lus10020622 [exp] 107 / 2e-23 AT2G27460 1248 / 0.0 sec23/sec24 transport family protein (.1) Lus10004866 [exp] 105 / 5e-23 AT2G27460 1248 / 0.0 sec23/sec24 transport family protein (.1) Lus10019516 [exp] 55 / 3e-07 AT2G21630 1093 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10043359 [exp] 54 / 6e-07 AT2G21630 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021964 [exp] 52 / 1e-06 AT1G05520 486 / 9e-168 Sec23/Sec24 protein transport family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G211100 [exp] 1021 / 0 AT3G07100 1296 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Potri.008G049700 [exp] 1006 / 0 AT3G07100 1306 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Potri.013G035800 [exp] 439 / 3e-137 AT4G32640 1219 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.005G049100 [exp] 416 / 1e-128 AT4G32640 1238 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.004G201800 [exp] 91 / 1e-18 AT2G27460 1266 / 0.0 sec23/sec24 transport family protein (.1) Potri.009G163300 [exp] 85 / 1e-16 AT2G27460 1235 / 0.0 sec23/sec24 transport family protein (.1) Potri.014G178500 [exp] 60 / 7e-09 AT2G21630 1028 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.019G003100 [exp] 54 / 6e-07 AT3G23660 1181 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.001G307400 [exp] 47 / 0.0001 AT1G05520 1235 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.014G112600 [exp] 46 / 0.0002 AT4G01810 1364 / 0.0 Sec23/Sec24 protein transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04810 [flax] [poplar] zf-Sec23_Sec24 Sec23/Sec24 zinc finger CL0128 [flax] [poplar] vWA-like PF04811 [flax] [poplar] Sec23_trunk Sec23/Sec24 trunk domain CL0128 [flax] [poplar] PF08033 [flax] [poplar] Sec23_BS Sec23/Sec24 beta-sandwich domain
Representative CDS sequence Show only first row Show all	>Lus10016597 pacid=23143944 polypeptide=Lus10016597 locus=Lus10016597.g ID=Lus10016597.BGIv1.0 annot-version=v1.0 ATGGGCACTGAGAATCCTGGTCGTCCAAGTTTCCCAGCGAGACCTTCAACCACTCCTTTTGCTACTGCTCCCCCAACAATGACTCCATTTTCCTCTTCTG GTGCAGTGGTTGGACCTGAGGCCTCTGCTTTGAGGCCTGCTCGACCATCTCTTCCACCAAGTACTTTGCCATCTATGACGGCAGGATCAGCAGGTGTAGT GGAGGCCCCAGGCTTCAGGCCAGCACCGCCATCTCGTTTTAATGATCCTTCCTTGCCTGCCCTGCCACCATCGTATGTGCTGCCAGCTTCTGGAACATTC AACCGCTACCCAACTCCACCATTTGCATCTATGCCCCCAGGTCCTACTCATTCTCCAGTTATAGGGCAGCCACCATTTCAGCCTCCTCCCAGTCAGGCAT CACCTCCTATATCTTTCCGTCCGCAGGGACAGGTTCCTGTAGTGCCTATGGGATCTTCGCCAGTAGGAGGAAATCCTCCTCGGGTATCACCAGATTTTCC GTTTCCTGCATCGAGGCCAAATTTTCAGCCATCTTCCCCACCTTCAGTTTCGGGGTATCCTACAGCTGGAGCCACTTCACAGCCACCCTTACCTGGATAT GTTAAGCAAGCAAATGCAGTTCCACAAGGCCCTCCTGTACACTCACCTTTTCAAGCTGCACAAGGAGGTTATGTACCTTCTGCACCAACACCATCCCCAC ATTTTCTTTCTCAACAAGGCGCTCTAGTTCAAGCTCCACCGGTAGCTTCTCGGTTTGGTTTGCATTCCTGGGACCAGATGCAACATCCAGGCACTATGCC ACCTATGGGTGGCATGCAAGCTTTGGTAGAAGATTTCAGTTCACTGTCTATTGGGTCTATTCCAGGATCGATTGAACCCGGAGTTGATTCGAAAGCATTT CCTAGGCCACTGGAAGGTGATGTGGAGCCCAATGTATTGCCTGAGCTAACCTCATTGAATTGCAATGCTAGATATCTTCGGCTTACAACAAATGCCATTC CAAATTCCCAGTCTTTAGCCTCAAGGTGGCATTTGCCACTTGGTGCAGTTGTTTGTCCTCTCGCTGAAGCACCAGAAGGGGCGGAGGTGCCAGTGTTAAA CTTCGTTCCAAGTGGGATAATACGTTGCAGAAGATGCCGTACCTATGTAAATCCCTTTGTAACATTTACGGATACTGGGAGGAAATGGCGCTGCAACATC TGTTCTCTGCTTAATGATGTTCCCGGAGAATATTATGCTCAATTAGATGCCACCGGTAGAAGAATTGATCTGGATCAGAGGCCTGAGCTGACTAATGGAA GCGTTGAGTTTGTTGCCCCAACCGAATATATGGTGCGGCCTCCAATGCCCCCACTATATTTCTTTCTGATTGATGTATCAATCTCTGCGATTAAAAGTGG TATGATTGAGGTTGTAGCAAAGACTATAAAGTCTTGTTTGGATGATCTGCCTGGATATCCCAGAACACAGATAGGGTTTATCACCTATGACAGCACATCA TCCTTGACGCAGCCTCAGATGATGGTTGTTTCTGATCTAGATGACATTTTTGTTCCACTGCCTGATGATCTCCTTGTTAATTTGTCTGAATCAAGAACTG TGGTGGAAGCATTCTTGGATAGTTTACCAACAATGTTTCAGGACAACATGAATGTGGAATCTGCTTTTGGTCCTGCTCTAAAAGCTGCATTTATGCTCAT GAGCCAACTGGGTGGCAAGCTTCTAATATTTCAAAACACAATGCCATCTCTTGGTGTTGGCCGCTTAAAGTTGCGGGGAGATGATCCTCGTGTGTATGGA ACAGATAAGGAGCATGGTTTACGTGTACCAGAGGATCCATTTTACAAACAAATGGCTGCTGATTTAACTAAGTACCAGATTGGAGTTAACATCTATGCAT GCAGCGACAAGTACAATGATTTAGCCTCCATAGGAACCCTTGCTAAATATACTGGAGGACAGGTGTATTATTATCCAAATTTCCAAGCTGCCAATCATGC AGAGAAGTTGAGCCATGAGTTAGGCAGAGACCTTACTAGAGAAACAGCTTGGGAGGCTGTAATGCGCATAAGATGTGGCAAAGGAATTCGGTTTACATCC TATCACGGGAATTTCATGTTAAGGTCTACGGATCTAGTGGCGCTTCCGGCTGTTGATTGTGACAAAGCATATGCAATGCAGTTATCACTCGAGGACACAT TGCTGACAATTCAGACTGTCTATTTCCAAGTTGCGCTACTTTACACTGCTTCTTGTGGAGAGAGGCGTATAAGAGTACACACTGCTGCAGCCCCTGTTGT TTCAGACCTGGGGGAGATGTATCGTCAAGCTGACAATGGTGCTATTGTTTCCTTGCTTAGTCGGCTAGCAATCGCACCACTCGGGGGAGGGTATGCAGAT GTTCCACTTGATGAGCGATGTGCTGTGGGATTCACAATGATGGCATTACCTGTTAAGAATTTGTTGAAACTTTTGTATCCTAGCTTAGTTCGACTAGATG ACTATCTCGTAAAGCCATCTGCTGATGCCGGTGAGCTTGGAAATGTGATGAAGAGATTACCACTTACAGCAGACAGCCTTGATTCTAGAGGCCTTTATAT CTATGATGACGGGCTTCAGTTTGTTCTATGGTTCGGAGGAACGCTATCACCTGATATTGCTATGAACTTACTGGGGCCGGATGCTGCAGTTGAGCTATCT AGGGTTACTCTGATGGGGCAGGAAACAGAAATGTCAAGAAAGCTAATGCTTTTATTGAAGAAGTTACGGGAGAGCGATCCGTCATACTATCAGTTGTGTA ATCTTGTAAGACAAGGCGAACAACCCAGAGAAGGGTTTATGGTACTTACAAAATTAGTTGAGGACCCAGCGGGTGGAACCAATGGTTATGTTGACTGGAT GATTCAACTACATCGCCAAGTCCAACAAAATGCGTAA
AA sequence Show only first row Show all	>Lus10016597 pacid=23143944 polypeptide=Lus10016597 locus=Lus10016597.g ID=Lus10016597.BGIv1.0 annot-version=v1.0 MGTENPGRPSFPARPSTTPFATAPPTMTPFSSSGAVVGPEASALRPARPSLPPSTLPSMTAGSAGVVEAPGFRPAPPSRFNDPSLPALPPSYVLPASGTF NRYPTPPFASMPPGPTHSPVIGQPPFQPPPSQASPPISFRPQGQVPVVPMGSSPVGGNPPRVSPDFPFPASRPNFQPSSPPSVSGYPTAGATSQPPLPGY VKQANAVPQGPPVHSPFQAAQGGYVPSAPTPSPHFLSQQGALVQAPPVASRFGLHSWDQMQHPGTMPPMGGMQALVEDFSSLSIGSIPGSIEPGVDSKAF PRPLEGDVEPNVLPELTSLNCNARYLRLTTNAIPNSQSLASRWHLPLGAVVCPLAEAPEGAEVPVLNFVPSGIIRCRRCRTYVNPFVTFTDTGRKWRCNI CSLLNDVPGEYYAQLDATGRRIDLDQRPELTNGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIKSGMIEVVAKTIKSCLDDLPGYPRTQIGFITYDSTS SLTQPQMMVVSDLDDIFVPLPDDLLVNLSESRTVVEAFLDSLPTMFQDNMNVESAFGPALKAAFMLMSQLGGKLLIFQNTMPSLGVGRLKLRGDDPRVYG TDKEHGLRVPEDPFYKQMAADLTKYQIGVNIYACSDKYNDLASIGTLAKYTGGQVYYYPNFQAANHAEKLSHELGRDLTRETAWEAVMRIRCGKGIRFTS YHGNFMLRSTDLVALPAVDCDKAYAMQLSLEDTLLTIQTVYFQVALLYTASCGERRIRVHTAAAPVVSDLGEMYRQADNGAIVSLLSRLAIAPLGGGYAD VPLDERCAVGFTMMALPVKNLLKLLYPSLVRLDDYLVKPSADAGELGNVMKRLPLTADSLDSRGLYIYDDGLQFVLWFGGTLSPDIAMNLLGPDAAVELS RVTLMGQETEMSRKLMLLLKKLRESDPSYYQLCNLVRQGEQPREGFMVLTKLVEDPAGGTNGYVDWMIQLHRQVQQNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10016597 [exp]	0	1
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10026726 [exp]	2.8	0.9520
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10024135 [exp]	3.2	0.9534
AT2G07360			SH3 domain-containing protein ...		Lus10027587 [exp]	3.3	0.9553
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10013101 [exp]	3.9	0.9530
AT3G63460		EMB2221	transducin family protein / WD...		Lus10005323 [exp]	7.7	0.9393
AT5G40740			unknown protein		Lus10032081 [exp]	7.9	0.9150
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Lus10030776 [exp]	9.2	0.9202
AT1G73430			sec34-like family protein (.1....		Lus10000075 [exp]	9.9	0.8792
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040531 [exp]	10.0	0.9504
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Lus10013253 [exp]	10.6	0.9198

Compare expression of checked genes

Lus10016597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.