Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79460 734 / 0 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G02780 284 / 1e-83 ATCPS1, ABC33, GA1 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G61120 230 / 9e-64 TPS4, GES, TPS04 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) AT4G16740 130 / 2e-31 ATTPS03 terpene synthase 03 (.1.2) AT3G25830 122 / 1e-28 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 122 / 1e-28 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT2G24210 121 / 2e-28 AtTPS10 terpene synthase 10 (.1) AT4G16730 114 / 3e-26 AtTPS02 terpene synthase 02 (.1) AT3G25810 108 / 3e-24 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 103 / 8e-23 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014673 [exp] 685 / 0 AT1G79460 650 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10012880 [exp] 677 / 0 AT1G79460 677 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10029033 [exp] 643 / 0 AT1G79460 662 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10034229 [exp] 619 / 0 AT1G79460 583 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004906 [exp] 579 / 0 AT1G79460 531 / 1e-178 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004443 [exp] 524 / 2e-175 AT1G79460 564 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10024120 [exp] 494 / 5e-162 AT1G79460 522 / 3e-173 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10005399 [exp] 471 / 7e-155 AT1G79460 515 / 1e-172 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006923 [exp] 403 / 2e-130 AT1G79460 538 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G082700 [exp] 862 / 0 AT1G79460 818 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082400 [exp] 859 / 0 AT1G79460 816 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.004G037900 [exp] 293 / 2e-86 AT1G61120 782 / 0.0 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) Potri.002G052100 [exp] 274 / 9e-80 AT4G02780 863 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.005G210300 [exp] 270 / 4e-78 AT4G02780 829 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.001G308200 [exp] 155 / 2e-39 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.001G308300 [exp] 153 / 5e-39 AT3G25830 507 / 4e-174 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G118600 [exp] 149 / 2e-37 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.019G023006 [exp] 139 / 3e-34 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 137 / 8e-34 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10016598 pacid=23143970 polypeptide=Lus10016598 locus=Lus10016598.g ID=Lus10016598.BGIv1.0 annot-version=v1.0 ATGTTTGCCGGTCAGGCTGCAGGGAGTCAATTACCCATGTCTACCACCCCATTGTGTCCTCCTGCCAATGCTGTTCCGAGTTCAGTAGAATGTAGAAAAT CTGGATCACACTTTTCTACAGAGTTCAGCAACGCCAACTTGAGGTTTGATGATCCCGTACAAATACAAAGGGTTAAGAGGATGTTTGATCAGACTCAACT GACTGTGTCTGCATACGACACAGCCTGGATGGCAATGGTTCCATCTCAAAGTTCAGCCATGGATAACTCTCCCCTCTTCCCTCAGTGCGCAAGATGGATA CTTGACAATCAACTTAGTGATGGGTCTTGGGGTCTCCCTTTGCCCCATCGTTATCCATCAACCAAGGATGCTCTCTCCTCTACATTGGCATGCATTCTAG CCCTCCATCAATGGGGTCTTGGTGAGCAACAAGTCACCAAAGGTCTGCGCTTTCTTGACTTGAATGCTGCTTCCCTTGGGGATCACAAGCAGCAAGCGCC TGTTGGATTTGACATAATATTTTCTGGAATGATCGAGAATGCAAGACGATTGGGCTTGAGCCTCCCTTTCAAATCGACGGATATCGATACTATACTGACT AGGAGAAATTCAGAGCTCACTAGAAATGCAGAAGGAAAAAACATCTACTTGGCATATGTTTCAGAAGGCATCCAACAGTCACAAGACTGGGAGATGGTCA TGAAATATCAGAGGACTAATGGATCCCTGTTCAATTCCCCATCGACTACTGCAGTTGCTTTTTCTCAGCTTCAGGATCCTGATTGTCTTCGCTATCTTTA TGCCCTGTTAGATAAATTTAAAGATGCTGTACCTACGATATATCCACTGGACATACGTCCCCGTCTTTCTATCATTGACACACTTGATAGACTAGGAGTG GCGCGGCACTTCACCAACGAAATCAAGATGGTGCTAGACCATACATACCAATGCTGGTTGCAAAGTGATGAAGAGCTTTTTTTGGATCCAACCACATGTG CTATGGCGTTTAGATTACTGCGTGTATATGGATATGATGTCTCTTCAGATATACTGTCGTCATTCTCAGAAGATTGTTTCTTCAACTCACTTGAAGGATA TTTGAAGGACACAACAGCTGTACTGGAGTTACACAGAGCTTCCCAAATAATTTATCTAGAAGAACCTATCCTGGAAACCCAAAATGCTTGGACAAGGAGT TTCCTAGAACGTGAACTGTCCAATGGTTCAATTAATGCTGACCAACTTGGCGGAAGTACTTCCACAAAGGTGCACGATGCTCTGAATCATCCCTATCATG TTGATCTGGATCGCTTTCTCCATAGGAGAAGTATTGACAATTACACTCTGGATAATACTTGGATCTTGAAGACCTCTTATTGGTACACTTCTCTCCTTTA CTTACATTTGAAGTACTTAAAGAATTATGAATCTGCTGACAATGCATCTGTTGGTCCTGTGCATACTAGTTGCCCTATCGTTGGAAACAAAGAATTGCTT AAACTGGCAGCAGAAGACTTCAACACCTGTCAGTTGATACAGCAGGAAGAACTCAAGCAGCTACGAAGATGGGTGATGGAGAAAAGATTGGACAAACTAT CGTTTGCAAGGCAGAAGCTGGGCTACTGCTACTTCTCAGCTGCTGCTACTCTGTATGCTCCTGAGCTATCCGATGCTCGCATATCGTGGGCGAAAAATGG CGTTCTTACGACTGTTGTGGATGACTTTTTCGATGTTGCAGGGTCCATGGATGAATTAGTAAACCTTGTCCAACTGCTTGAGAAGTGGGAAGTTAATGGA AGCACAGATTTTTGCTCTGAGAAAGTTGAGATCCTGTTCACAGCAATTCATAGCACCATATGCGAGATTGGAGACAAGGCATTGGCTTATCAAGGACGTG ATGTTACGCGTCATATAATAGACATTTGGGTGGAACTGGTGAAGTCAATGTTGAAGGAAGCTGAGTGGTCAAGAAACAAGTGGGTGCCAACAAGGGAAGA ATATATGGACAATGCATACATATCATTCGCACTAGGGCCAATTGTACTTCCAGCTCTTTACTTGGTAGGGCCAAAGCTATCAGAGGAGATGGTGAGTAGT CCAGAGTACAAAAATTTGTTCCAAACAATGAGCACATGTGGCCGTCTCCTCAATGACTTGAGAGGAGTTAAGAGGGAAAGTGATGAAGTAAATGCGGTAG TACTGCTGGTGGAGGAAGGTGGTGGAGGAAGAAGCATAGAGGACGTGATGGAAGAGATTAAGAGAGAAATAGAGAGGGAGAGAAAGAAACTGTTTAAGAT GGTGCTGAAGGAGGAGGACAAAGATAACAAGGGTATACCAAGATGCTGCAAGGAACCTTTCTGGAAAATGGGGAAAGTGCTTCACCTTTTTTACAACAAG GATGATGGATTCACCAACACCGACTTGATCAATGCTGCTAGTTCCATCGTTAATGAACCTATCCGTCTTCTCCCTTAA
AA sequence Show only first row Show all	>Lus10016598 pacid=23143970 polypeptide=Lus10016598 locus=Lus10016598.g ID=Lus10016598.BGIv1.0 annot-version=v1.0 MFAGQAAGSQLPMSTTPLCPPANAVPSSVECRKSGSHFSTEFSNANLRFDDPVQIQRVKRMFDQTQLTVSAYDTAWMAMVPSQSSAMDNSPLFPQCARWI LDNQLSDGSWGLPLPHRYPSTKDALSSTLACILALHQWGLGEQQVTKGLRFLDLNAASLGDHKQQAPVGFDIIFSGMIENARRLGLSLPFKSTDIDTILT RRNSELTRNAEGKNIYLAYVSEGIQQSQDWEMVMKYQRTNGSLFNSPSTTAVAFSQLQDPDCLRYLYALLDKFKDAVPTIYPLDIRPRLSIIDTLDRLGV ARHFTNEIKMVLDHTYQCWLQSDEELFLDPTTCAMAFRLLRVYGYDVSSDILSSFSEDCFFNSLEGYLKDTTAVLELHRASQIIYLEEPILETQNAWTRS FLERELSNGSINADQLGGSTSTKVHDALNHPYHVDLDRFLHRRSIDNYTLDNTWILKTSYWYTSLLYLHLKYLKNYESADNASVGPVHTSCPIVGNKELL KLAAEDFNTCQLIQQEELKQLRRWVMEKRLDKLSFARQKLGYCYFSAAATLYAPELSDARISWAKNGVLTTVVDDFFDVAGSMDELVNLVQLLEKWEVNG STDFCSEKVEILFTAIHSTICEIGDKALAYQGRDVTRHIIDIWVELVKSMLKEAEWSRNKWVPTREEYMDNAYISFALGPIVLPALYLVGPKLSEEMVSS PEYKNLFQTMSTCGRLLNDLRGVKRESDEVNAVVLLVEEGGGGRSIEDVMEEIKREIERERKKLFKMVLKEEDKDNKGIPRCCKEPFWKMGKVLHLFYNK DDGFTNTDLINAASSIVNEPIRLLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10016598 [exp]	0	1
AT1G76520			Auxin efflux carrier family pr...		Lus10025166 [exp]	5.9	0.6869
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10038016 [exp]	6.0	0.6917
					Lus10039654 [exp]	6.3	0.7087
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10003196 [exp]	16.9	0.6938
AT4G24380			unknown protein		Lus10000004 [exp]	24.4	0.6730
					Lus10042556 [exp]	37.4	0.6382
					Lus10016819 [exp]	39.1	0.6847
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Lus10040662 [exp]	53.4	0.6594
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10003995 [exp]	54.3	0.5950
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038283 [exp]	55.0	0.6584

Compare expression of checked genes

Lus10016598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.