Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26330 371 / 1e-123 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26320 358 / 2e-118 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G26300 354 / 8e-117 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26310 347 / 2e-114 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT5G25120 339 / 5e-111 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT3G26210 337 / 2e-110 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT5G25180 337 / 2e-110 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT3G48310 337 / 2e-110 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT5G57260 337 / 3e-110 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT5G25130 336 / 5e-110 CYP71B12 "cytochrome P450, family 71, subfamily B, polypeptide 12", cytochrome P450, family 71, subfamily B, polypeptide 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016601 [exp] 470 / 7e-162 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10029035 [exp] 459 / 1e-157 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10009903 [exp] 453 / 2e-155 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10030924 [exp] 448 / 3e-153 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10034230 [exp] 446 / 1e-152 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10012767 [exp] 440 / 3e-150 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10013194 [exp] 438 / 2e-149 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10030708 [exp] 433 / 1e-147 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10024331 [exp] 421 / 2e-142 AT5G25180 378 / 4e-126 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 442 / 3e-151 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 441 / 6e-151 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 437 / 4e-149 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 436 / 9e-149 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 436 / 9e-149 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 433 / 1e-147 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 431 / 7e-147 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.011G130800 [exp] 427 / 3e-145 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 425 / 2e-144 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.016G137600 [exp] 403 / 6e-136 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10016599 pacid=23143998 polypeptide=Lus10016599 locus=Lus10016599.g ID=Lus10016599.BGIv1.0 annot-version=v1.0 ATGGAGGTCATTCTAGATTCCTCTTACCTCTTCATCTTCCTCGCCTTCCTACCATTCCTCTATACCTTGATCCACCTCTTCAATGCCATCGGCGGCGGTG CCGGTGGCAGGGTACCCCCTGGCCCACGCAAGCTACCCGTGATCGGAAACCTCCACAAGCTCAAATCACCGCCGCACCGTTCCCTGGCGGAATTAGCATC CAAACACGGCCCTATCATGCGCCTCCAGCTCGGACAGCTCACCACCACCGTCATCTCCTCCGCTGATCTCGCCAGAGATATCCTCACCACCTACGACGTC ACCTTCGCCAACCGACCTGTTACTGCCGGCAACCGGATCCTCTCCTACGGCCTCCTAGACATCGGGTTCGCCCCCTACGGCCCTTACTGGCGCCAGCTGA GGAAGATCTGCAAGTCCGACCTCCTCAGTCCCGGTCGGGTCGGGTCCTTCCGGAAGATTCGGGAGGATGAGGCGGCCAAATTGGTGCGGGAAATTAGGGA AGAAGCTGTTGTAGGGAACAATAACAATGGTGTTAATTTGAGCAAGAAACTATGTGGGATGACCTACGGGATCGCGCTGAGCTCGGCGTTTGGCAGCAAT TGCAAGGCGAGGGAGGACTACATAGCGATCGTGCACAGGATTTTCAAGATGATGACAGGGTTTACGCTGGTGAATCTTTTCCCGTCGGTTAAGGTGCTAG AATGGGCCACTGGGATGAAGCCCAAGCTTATGAAGCTTCATCGGGAGAAAGACGCGATTGTTCAGCGCATTTTGGATGAGCATAAACAGAGATTATTAGA ACAGAGAAAGAAGGGAAATATTGGAAATGAATTAGCCGGGGAAGAAGACAAAGAAGAAGAAGTAGAAGAAGAAGATCTGACTGATGTGCTGCTAAAATTT CAAGAGCCTGGTAATCTTGAGTTTCCACTCACCGATGATTCCATCAAAGCAAACCTATGGGATATGGTGACAGCAGGGGCAGAGACATCTTCAGCAACGA TGGAGTGGGCAATGTCGGAGATGCTTATAAACCCACAAGTAATGCAAAAGGCACAATCCGAGGTCCGGCGAGTCTTCGAGGGGAAGTCAGCCGTGGATGA ATCCCTCCTCCACGAGCTCCACTACTTAAAAGCAGTGATCAAAGAGACGCTAAGGCTCCACCCGCCATCTCCACTGTTGATGCCAAGGGAATCAAGCGAG GCTTGTGAGATCAAGGGCTACAACATTCCTTCCAAGTCACGTGTCATCATCAATGCGTGGGCTATCCAGCGAGACCCCGAGTACTGGCCTGACGATCCGG AGAGGTTTGCTCCAGAAAGGTTTCTAGAGAGTCCTTTGGATTACAAAGGGTCGGAGTTCCAGTTTATACCGTTTGGTGCTGGGAGGAGGATGTGTCCTGG AGTGCTGTTTGCTCAGGCGAACGTCGAGCTTTCGCTTGCGAATCTCTTGTTCCATTTCGACTGGAAACTTCCTGACGGAATGATGGCCGGGGAGTTGGAT ATGAGTGAATCGTTTGGCCTCGCGGTTTCTAGGAAACAAAGCCTCGTTGCACTTCCCATTCCTTACAGCCCTTAA
AA sequence Show only first row Show all	>Lus10016599 pacid=23143998 polypeptide=Lus10016599 locus=Lus10016599.g ID=Lus10016599.BGIv1.0 annot-version=v1.0 MEVILDSSYLFIFLAFLPFLYTLIHLFNAIGGGAGGRVPPGPRKLPVIGNLHKLKSPPHRSLAELASKHGPIMRLQLGQLTTTVISSADLARDILTTYDV TFANRPVTAGNRILSYGLLDIGFAPYGPYWRQLRKICKSDLLSPGRVGSFRKIREDEAAKLVREIREEAVVGNNNNGVNLSKKLCGMTYGIALSSAFGSN CKAREDYIAIVHRIFKMMTGFTLVNLFPSVKVLEWATGMKPKLMKLHREKDAIVQRILDEHKQRLLEQRKKGNIGNELAGEEDKEEEVEEEDLTDVLLKF QEPGNLEFPLTDDSIKANLWDMVTAGAETSSATMEWAMSEMLINPQVMQKAQSEVRRVFEGKSAVDESLLHELHYLKAVIKETLRLHPPSPLLMPRESSE ACEIKGYNIPSKSRVIINAWAIQRDPEYWPDDPERFAPERFLESPLDYKGSEFQFIPFGAGRRMCPGVLFAQANVELSLANLLFHFDWKLPDGMMAGELD MSESFGLAVSRKQSLVALPIPYSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10016599 [exp]	0	1
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Lus10017571 [exp]	1.0	0.9309
AT5G16550			unknown protein		Lus10002085 [exp]	2.0	0.9235
AT5G03110			unknown protein		Lus10026490 [exp]	2.4	0.9304
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10002834 [exp]	2.6	0.9183
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10003461 [exp]	3.0	0.9302
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Lus10028530 [exp]	3.0	0.9124
AT5G53730			Late embryogenesis abundant (L...		Lus10032932 [exp]	3.2	0.9225
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10030336 [exp]	4.6	0.9010
AT5G03110			unknown protein		Lus10019920 [exp]	4.9	0.9134
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007948 [exp]	4.9	0.9191

Compare expression of checked genes

Lus10016599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.