Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76710 600 / 0 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT1G77300 204 / 8e-57 ASHH2, CCR1, SDG8, EFS, LAZ2 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) AT4G30860 148 / 3e-39 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT3G59960 138 / 2e-36 SDG24, ASHH4 SET DOMAIN PROTEIN 24, histone-lysine N-methyltransferase ASHH4 (.1) AT2G44150 134 / 5e-35 SDG7, ASHH3 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) AT5G42400 105 / 1e-23 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT4G27910 98 / 2e-21 SDG16, ATX4 SET domain protein 16 (.1) AT2G31650 97 / 4e-21 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT1G05830 97 / 6e-21 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT1G02580 94 / 4e-20 SDG5, EMB173, MEDEA, FIS1, MEA SET DOMAIN-CONTAINING PROTEIN 5, MEDEA, FERTILIZATION INDEPENDENT SEED 1, EMBRYO DEFECTIVE 173, SET domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028662 [exp] 194 / 2e-53 AT1G77300 774 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10000967 [exp] 194 / 2e-53 AT1G77300 748 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10039118 [exp] 157 / 3e-43 AT2G44150 434 / 1e-152 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10038740 [exp] 149 / 2e-39 AT2G44150 399 / 5e-137 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10003777 [exp] 140 / 8e-36 AT4G30860 451 / 9e-154 ASH1-related 3, SET domain group 4 (.1) Lus10004012 [exp] 117 / 8e-28 AT3G61740 424 / 2e-136 SET domain protein 14 (.1.2) Lus10010121 [exp] 109 / 6e-25 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10012626 [exp] 106 / 4e-24 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10025172 [exp] 105 / 1e-23 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G195400 [exp] 662 / 0 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Potri.005G182100 [exp] 200 / 2e-55 AT1G77300 807 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.002G079100 [exp] 197 / 1e-54 AT1G77300 820 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.007G147200 [exp] 169 / 8e-48 AT2G44150 477 / 2e-169 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.017G000400 [exp] 166 / 8e-47 AT2G44150 471 / 5e-167 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.018G102100 [exp] 158 / 2e-42 AT4G30860 585 / 0.0 ASH1-related 3, SET domain group 4 (.1) Potri.005G260100 [exp] 110 / 2e-25 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.002G001000 [exp] 108 / 8e-25 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.014G098400 [exp] 106 / 4e-24 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.007G033000 [exp] 104 / 2e-23 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10016600 pacid=23143932 polypeptide=Lus10016600 locus=Lus10016600.g ID=Lus10016600.BGIv1.0 annot-version=v1.0 ATGGATGAAGAGAACCAAGTGCTGCCACAGTATGAACACATTCCACAAAATGAATTTTTACATAGGAAACATAAGAAACAGAAGGAAGAGGACATTGCAA TCTGTGAATGCAAATTTGATGCAAATGACCCTGACAGTGCTTGCTCCGAACGGTGCTTAAATTGGCTAACAAGCACAGAGTGCACTCCGGGTTATTGCCC ATGTGGCATCCATTGCAAAAATCAGAAGTTTCAGAATTGCCAATACGCTAAAACAAAGTTGGTCAAGACTGACGGCCGTGGATGGGGTCTTCTTGCTGAT GAAGACATCAAGGCTGGACACTTCATCATCGAGTATTGTGGAGAAGTAATATCCTGGAAAGTTGCAAAGCGGAGGTCTTATTTCTATGAAAGTAATGGTC AGCAAGATGCATATATTATTTCACTGAATGCTTCTAAATCAATTGACGCTACTAGAAAAGGAAGTCATGCTAGGTTTATTAACCATTCATGCCAACCGAA CTGTGAGACAAGGAAGTGGAACGTGTTGGGAGAAATACGGGTTGGAATTTTTGCTAAGCAAGATATTTCCATTGGAACTGAACTATCGTATGATTATAAC TTCGAATGGTATGGTGGTGCAAAGGTTCGGTGTTTATGTGGTGCAGCTGGCTGCTCTGGATTTCTGGGTGCGAAGTCCCGTGGTTTTCAGGAGGACACAT ACTTGTGGGAAGATGACGATGAAAGGTACTCAGTCGAAGATATTCCTCTCTACGATTCTGCAGAGGACGAGCCCTCATTGAAGTTTCCAAAAATTACTGG CAGCTTCAGTCCTAAATCTGAATTTACTGAAAATTCTATTGTGATAAACACTAACAATGGGTCTGAAATTTACTCCAACACCACTGGCCATTGTGGTGAG GCAATTGATCTTGTTCCAGTTGATCGAGCAGTTGCGGTTGCATATCCAGTAAAATCTCAGCCAACCAAAGAGGTGAACCTGTATTCTCAAGATACCCAAG AGCCTTTAGCACCAAAGAATGCAATGGTTTCACGGATCCGGAGTAATAGTCCCATCCCAAATATTAAACGGACAAAAAAGATTGCTGGTGGAAAGGCTAA ACAGCTAATTGACAAGCAAGTCGATGCTAAACGTGTTGCACAACTGTTATCCTTGAAAGAAGCGAAACAGGAAGTGCTTATATATGAGGAAATGAAGAAT GATGCAGTGTCTCAGCTTTCAGACCTGTACGCCGAAATAAGGCCAGCCATTGAAGAGCACGAAAGAGATAGCCAGGACAGTGTGGCCACCAGTGTAGCTG AAAAGTGGATCGAGGCATGCTGCTCAAAATTAAAGGCGGAATTTGACCTTTACTCGTCCATTATCAAGAGAGTGGCATCCAATCCTCCCAAGGTAGAAAT GGAGATGGATAGTGATATCAAGTACCTAGGAATGTGA
AA sequence Show only first row Show all	>Lus10016600 pacid=23143932 polypeptide=Lus10016600 locus=Lus10016600.g ID=Lus10016600.BGIv1.0 annot-version=v1.0 MDEENQVLPQYEHIPQNEFLHRKHKKQKEEDIAICECKFDANDPDSACSERCLNWLTSTECTPGYCPCGIHCKNQKFQNCQYAKTKLVKTDGRGWGLLAD EDIKAGHFIIEYCGEVISWKVAKRRSYFYESNGQQDAYIISLNASKSIDATRKGSHARFINHSCQPNCETRKWNVLGEIRVGIFAKQDISIGTELSYDYN FEWYGGAKVRCLCGAAGCSGFLGAKSRGFQEDTYLWEDDDERYSVEDIPLYDSAEDEPSLKFPKITGSFSPKSEFTENSIVINTNNGSEIYSNTTGHCGE AIDLVPVDRAVAVAYPVKSQPTKEVNLYSQDTQEPLAPKNAMVSRIRSNSPIPNIKRTKKIAGGKAKQLIDKQVDAKRVAQLLSLKEAKQEVLIYEEMKN DAVSQLSDLYAEIRPAIEEHERDSQDSVATSVAEKWIEACCSKLKAEFDLYSSIIKRVASNPPKVEMEMDSDIKYLGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76710		ASHH1 ,SDG26	ASH1-RELATED PROTEIN 1, ASH1 R...		Lus10016600 [exp]	0	1
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004596 [exp]	2.6	0.9322
					Lus10021689 [exp]	3.2	0.9370
AT5G27400			S-adenosyl-L-methionine-depend...		Lus10031516 [exp]	3.2	0.9361
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034468 [exp]	3.2	0.9426
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10027446 [exp]	3.9	0.9364
AT5G64730			Transducin/WD40 repeat-like su...		Lus10002090 [exp]	3.9	0.9227
AT1G77280			Protein kinase protein with ad...		Lus10039518 [exp]	6.0	0.9331
AT5G55700		BAM4, BMY6	BETA-AMYLASE 6, beta-amylase 4...		Lus10016615 [exp]	6.1	0.9114
AT1G28410			unknown protein		Lus10013982 [exp]	7.3	0.9194
AT5G03430			phosphoadenosine phosphosulfat...		Lus10013826 [exp]	7.6	0.9125

Compare expression of checked genes

Lus10016600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.