Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26210 384 / 1e-128 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT3G26320 370 / 2e-123 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G26300 370 / 3e-123 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26310 369 / 9e-123 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26330 364 / 6e-121 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT5G25140 364 / 6e-121 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT1G13110 363 / 1e-120 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT5G25120 362 / 4e-120 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT3G48280 355 / 1e-117 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT5G57260 355 / 1e-117 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004907 [exp] 606 / 0 AT3G26330 330 / 2e-108 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10010545 [exp] 587 / 0 AT3G26330 321 / 8e-105 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10029035 [exp] 546 / 0 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10034230 [exp] 530 / 0 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10009903 [exp] 500 / 7e-174 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10030924 [exp] 498 / 6e-173 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10030708 [exp] 487 / 6e-169 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10040120 [exp] 486 / 6e-168 AT3G48280 377 / 5e-126 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10013194 [exp] 484 / 7e-168 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 578 / 0 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 544 / 0 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 542 / 0 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 541 / 0 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 540 / 0 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 540 / 0 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 540 / 0 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 512 / 6e-179 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 505 / 4e-176 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.001G365300 [exp] 466 / 9e-162 AT3G26300 291 / 7e-94 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10016601 pacid=23143997 polypeptide=Lus10016601 locus=Lus10016601.g ID=Lus10016601.BGIv1.0 annot-version=v1.0 ATGGAGTACTACTACTTCCAATTCCTCTCTCTCCCATCTTCAATCTCATCTTCCTTTCTCTTCCTATCCTTCCTCCTCCTCCTCCTCTCCTTTCTCCGCC GCAAACCAAACACCTCATCGTCCAACGCACCTCCTCCTCCTCCGGGTCCCACTAAGCTCCCTATCATCGGAAACCTCCACCAGCTCGCCGGCGGGTCTCT CCCCCACCACCGCCTCCGCGACCTCTCCAGGATATATGGAGGCGTAATGGGTCTCCAGCTGGGCCAAGTCCCCCACGTATTCATTTCCTCCGCAGAATCC GCCAGAGAAGTCATGAAGACCCACGACGTCGTCTTCGCCCAGCGCCCCAAGCTGCTTGCCGCCTCCATCATCAGCTATGATATGAGTGACATCGCCTTCG CACCTTACGGAGCTTACTGGAGGCAGCTCCGCAAGATCTGCATCCTCGAGCTGCTGAGCGCCAAGAGGGTCCAATCTTTCCGGTCGATCCGGGAGGAAGA GGTGTCCAATGCAGTGGCCCGGATCACCGCTTCGTCTGGTCGGGAGTTCAACTTCAGCAAGATGATCGTCTCCTCCACCCACGGAATCGCTGCCAGGATT ACTTTCGGCAAGAAGTATAAAGGGCAAGACCAGTTTATTCCCGTGGTGGAGGATATTACTCGGGTAGCAGGCGGGTTCAGCCTGGCTGATCTGTTTCCTT CAGCCAAATTGCTACTGCTTGTGAGTGGGATGAGGTCTAAACTCCTCAAACTGAGAGGCGAAGTTGACAATATGTTGGATGGTATAATCGCAGAGCATAG GAGCAAGGGGAGGACGGAAGATTCGGCTGGCAGCGGCGGGGAGGTAGATGATTTGGTTGATGTTCTTTTGAAGCTTCAGGGTAGTGGAGATCTGGAATTC CCCATCACTGATGGCAACATCAAGGCGGTCATTCTGGATATTTTTATTGCGGGGAGTGAGACTTCGTCAACAACTGTGAACTGGGCGATGTCAGAAATGG TTAAGAATCCAGGAGTTCTGCAAAAGGCACAAGCAGAGGTAAGGAGAGTTTTCGGTAGCAAAGGAGAGGTGGATGAAACTTTGCTTCATGAGCTAAACTA CCTGAAACTGGTGATTAAAGAGACAATGAGGCTACATAGTCCAGCACCGTTGTTGCTTCCAAGGGAATGCAGCGAAGATTGTGAGATCAATGGGTATCTG GTGAAGGCCAAGAGCAAGGTGATGGTTAACGTATGGGCCATAGGTAGGGATCCAAAGTATTGGGAGGAGCCAGAAGAGTTTCATCCCGAGAGGTTTATGG ACAACTCAATTGATTTCAAAGGGCTCAATTTCGAGTTCTTGCCCTTTGGTGCTGGGAGAAGGATGTGCCCTGGAATTGTGTTTGGTTTGGCCAATGTTGA GTTGCCATTGGCTAAGTTCCTGTACCATTTTGACTGGAAACTTGCAGGCGGCGCTAAGGGAGAAGATTTGGACATGACAGAGTCGTTTGGAGCAACTGTT ACGAAGAAAAATGACCTCAAGTTGATTCCGACTCCTTACCGCAGGAGTTAG
AA sequence Show only first row Show all	>Lus10016601 pacid=23143997 polypeptide=Lus10016601 locus=Lus10016601.g ID=Lus10016601.BGIv1.0 annot-version=v1.0 MEYYYFQFLSLPSSISSSFLFLSFLLLLLSFLRRKPNTSSSNAPPPPPGPTKLPIIGNLHQLAGGSLPHHRLRDLSRIYGGVMGLQLGQVPHVFISSAES AREVMKTHDVVFAQRPKLLAASIISYDMSDIAFAPYGAYWRQLRKICILELLSAKRVQSFRSIREEEVSNAVARITASSGREFNFSKMIVSSTHGIAARI TFGKKYKGQDQFIPVVEDITRVAGGFSLADLFPSAKLLLLVSGMRSKLLKLRGEVDNMLDGIIAEHRSKGRTEDSAGSGGEVDDLVDVLLKLQGSGDLEF PITDGNIKAVILDIFIAGSETSSTTVNWAMSEMVKNPGVLQKAQAEVRRVFGSKGEVDETLLHELNYLKLVIKETMRLHSPAPLLLPRECSEDCEINGYL VKAKSKVMVNVWAIGRDPKYWEEPEEFHPERFMDNSIDFKGLNFEFLPFGAGRRMCPGIVFGLANVELPLAKFLYHFDWKLAGGAKGEDLDMTESFGATV TKKNDLKLIPTPYRRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Lus10016601 [exp]	0	1
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10031100 [exp]	10.2	0.9685
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10014148 [exp]	13.7	0.9630
AT4G04960			Concanavalin A-like lectin pro...		Lus10018602 [exp]	14.0	0.9376
AT5G45860		RCAR5, PYL11	regulatory components of ABA r...		Lus10003187 [exp]	18.2	0.9609
AT3G62650			unknown protein		Lus10017613 [exp]	21.4	0.9576
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10029035 [exp]	22.7	0.9614
AT4G37290			unknown protein		Lus10011512 [exp]	23.0	0.9523
AT3G07310			Protein of unknown function (D...		Lus10003162 [exp]	24.5	0.9441
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024060 [exp]	26.6	0.9425
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10017522 [exp]	27.3	0.9571

Compare expression of checked genes

Lus10016601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.