Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016602 pacid=23143965 polypeptide=Lus10016602 locus=Lus10016602.g ID=Lus10016602.BGIv1.0 annot-version=v1.0 ATGTACTCGTCGTGGGAGAGGCGAAGGATCCAGGAGATATCGTCGATTGAGTTCTCGAGACATCTTGCGGGAGTCGGCGGTGGGGATATTGGTACTGACG ACGCGCTTCATAATCCCGTTGGCTTTGCATGTGACGATAGAGATGGGGCTCGTCGAGGACTTGTGTTGGGTGGATGTGACGATAAAGACAAAGGTCGTCG CTTGGGGAATTTGGAGAAGACGTCAAGTACAAGTGGGATGAGGGTGAAGATGTTGCTACTGGTCATGCTTGAGCCATATAACCGAGACAACATATTATGG TCACGGTTCGGGATATACATGGCAACTTGGTCAAGGTTACAGATCCTTCAAACGGTTGCTGCAACAGATCGAGTTGGCCTAAGCATCGGAGTGAAAAGTG GGCTTGGACGGAGTATCAAACATCCCAACGCCGTGAACTTTGTCAATGAAACACAGAGACCAGAAGCAATATTCGGATTGCTGAATTCGAAGCGCACGAT AAACCCAGAACATCATAAATTGCAGGGATCGTAA
AA sequence Show only first row Show all	>Lus10016602 pacid=23143965 polypeptide=Lus10016602 locus=Lus10016602.g ID=Lus10016602.BGIv1.0 annot-version=v1.0 MYSSWERRRIQEISSIEFSRHLAGVGGGDIGTDDALHNPVGFACDDRDGARRGLVLGGCDDKDKGRRLGNLEKTSSTSGMRVKMLLLVMLEPYNRDNILW SRFGIYMATWSRLQILQTVAATDRVGLSIGVKSGLGRSIKHPNAVNFVNETQRPEAIFGLLNSKRTINPEHHKLQGS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016602 [exp]	0	1
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10013470 [exp]	21.0	0.7933
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10036930 [exp]	27.5	0.7920
AT5G63010			Transducin/WD40 repeat-like su...		Lus10027338 [exp]	37.7	0.7200
AT2G23450			Protein kinase superfamily pro...		Lus10019657 [exp]	40.0	0.7890
AT4G24380			unknown protein		Lus10000004 [exp]	41.1	0.7236
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10043378 [exp]	41.9	0.7856
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10029692 [exp]	46.0	0.7952
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10032277 [exp]	61.3	0.7771
					Lus10000811 [exp]	62.4	0.7512
AT2G23450			Protein kinase superfamily pro...		Lus10000741 [exp]	64.0	0.7616

Compare expression of checked genes

Lus10016602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.