Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13110 422 / 3e-148 SAT-M, SAT-A, SAT3, SAT-1, AtSerat2;2 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) AT1G55920 416 / 4e-147 SAT5, SAT1, AtSerat2;1 SERINE ACETYLTRANSFERASE 5, SERINE ACETYLTRANSFERASE 1, serine acetyltransferase 2;1 (.1) AT5G56760 339 / 1e-116 SAT-52, AtSerat1;1, SAT5 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) AT4G35640 280 / 1e-92 ATSERAT3;2 serine acetyltransferase 3;2 (.1) AT2G17640 259 / 5e-85 SAT-106, AtSerat3;1 SERINE ACETYLTRANSFERASE 106, Trimeric LpxA-like enzymes superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040503 [exp] 580 / 0 AT3G13110 434 / 4e-153 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) Lus10032686 [exp] 338 / 2e-116 AT5G56760 481 / 2e-173 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Lus10008567 [exp] 335 / 4e-115 AT5G56760 482 / 2e-173 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Lus10010679 [exp] 285 / 3e-95 AT4G35640 448 / 6e-159 serine acetyltransferase 3;2 (.1) Lus10007424 [exp] 165 / 3e-48 AT4G35640 294 / 4e-98 serine acetyltransferase 3;2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G365500 [exp] 432 / 7e-153 AT3G13110 402 / 3e-140 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) Potri.013G109500 [exp] 346 / 1e-119 AT5G56760 419 / 1e-148 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Potri.015G147000 [exp] 337 / 3e-116 AT5G56760 420 / 5e-149 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Potri.005G099700 [exp] 145 / 4e-42 AT4G35640 280 / 2e-94 serine acetyltransferase 3;2 (.1) Potri.011G068001 [exp] 105 / 1e-27 AT2G17640 134 / 6e-39 SERINE ACETYLTRANSFERASE 106, Trimeric LpxA-like enzymes superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06426 [flax] [poplar] SATase_N Serine acetyltransferase, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10016603 pacid=23143962 polypeptide=Lus10016603 locus=Lus10016603.g ID=Lus10016603.BGIv1.0 annot-version=v1.0 ATGGCCACTTGCCTCGATACTTGCGCCACCACCACCACCGACCCCACCCTCCACCGAAGCCGCGACCCCATCGAGGATTACTCCCACTGCCACCACCCAA GGTATGCCCGGTTGTACAAACACAAACCTCCTTCTTTTGTTAGAAATCTCCACACTACTCCAAATCTCGATCTCTGGGCCAAAATGGTAGACGAAGCTAA GGTCGATCTGGAGCAAGAGCCGGTTCTTTCCGGCTACTATTACACCTCCATCCTCTCCCAGAAATCCCTAGAGACCGCTCTCGCCAACCATCTGGCTGTC AAATTGAGCAATTCCAGCCTCCCGATCGCTACCCTATTCGACATCTTCGCCGATGTACTGGTTAAGAACCCTGACGCGGTTCGGGCCGTGAAGGCCGATT TGCAGGCCGTCAAGGAACGGGACCCGGCCTGTATAAGCTACGTCCACTGTTTCCTCAGCTTCAAAGGGTTTCTGGCCATTCAGGCCCACCGAATCGCCCA CGAGCTGTGGCGCAAGGAGCGCAAGTCTCTGGCTTTGATGATCCAGAACAGAGTCTCGGAGGTTTTCGGAGTGGATATCCATCCCGGAGCCCGAATCGGA AAGGGGGTCCTGCTCGACCACGCTACCGGAGTAGTGATCGGGGAGACGGCGGTTGTCGGGGATGATGTGTCGATTCTGCACAGCGTGACTCTGGGTGGGA CAGGGAAAATGGGTGGGGACCGCCACCCGAAGATTGGAGATGGGGTTCTGATCGGAGCAGGGACCTGCGTGCTGGGGAACATTAGGGTCGGGGAAGGTGC CAAGATCGGGGCTTGTTCGGTGGTTTTGAAGGATATTCCTGCGAGGACGACGGCTGTGGGGAATCCGGCGAAGCTGATTGGTGGTAAGGATAACCCAACT AAGCTTGATAAAATCCCCAGCTTTACAATGGACCATACTTCGCACATTGCTGAGTGGTCCGATTATGTTATTTAG
AA sequence Show only first row Show all	>Lus10016603 pacid=23143962 polypeptide=Lus10016603 locus=Lus10016603.g ID=Lus10016603.BGIv1.0 annot-version=v1.0 MATCLDTCATTTTDPTLHRSRDPIEDYSHCHHPRYARLYKHKPPSFVRNLHTTPNLDLWAKMVDEAKVDLEQEPVLSGYYYTSILSQKSLETALANHLAV KLSNSSLPIATLFDIFADVLVKNPDAVRAVKADLQAVKERDPACISYVHCFLSFKGFLAIQAHRIAHELWRKERKSLALMIQNRVSEVFGVDIHPGARIG KGVLLDHATGVVIGETAVVGDDVSILHSVTLGGTGKMGGDRHPKIGDGVLIGAGTCVLGNIRVGEGAKIGACSVVLKDIPARTTAVGNPAKLIGGKDNPT KLDKIPSFTMDHTSHIAEWSDYVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Lus10016603 [exp]	0	1
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Lus10008633 [exp]	2.4	0.9031
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10013500 [exp]	2.4	0.9100
AT1G67810		SUFE2	sulfur E2 (.1)		Lus10006468 [exp]	7.5	0.8758
AT3G21790			UDP-Glycosyltransferase superf...		Lus10036087 [exp]	7.6	0.8090
AT1G78780			pathogenesis-related family pr...		Lus10042792 [exp]	12.1	0.9000
AT5G61820			unknown protein		Lus10003210 [exp]	14.5	0.8826
AT4G14680		APS3	Pseudouridine synthase/archaeo...		Lus10039389 [exp]	14.8	0.8860
AT5G39220			alpha/beta-Hydrolases superfam...		Lus10032977 [exp]	17.9	0.8710
AT5G17000			Zinc-binding dehydrogenase fam...		Lus10004379 [exp]	24.1	0.8861
AT3G22890		APS1	ATP sulfurylase 1 (.1)		Lus10006629 [exp]	25.0	0.8543

Compare expression of checked genes

Lus10016603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.