Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13120 223 / 1e-74 Ribosomal protein S10p/S20e family protein (.1.2) AT3G47370 52 / 7e-09 Ribosomal protein S10p/S20e family protein (.1.2.3) AT5G62300 52 / 7e-09 Ribosomal protein S10p/S20e family protein (.1.2) AT3G45030 52 / 7e-09 Ribosomal protein S10p/S20e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007111 [exp] 278 / 2e-95 AT3G13120 226 / 3e-75 Ribosomal protein S10p/S20e family protein (.1.2) Lus10031706 [exp] 61 / 3e-12 AT3G45030 202 / 7e-69 Ribosomal protein S10p/S20e family protein (.1) Lus10031126 [exp] 59 / 3e-11 AT3G45030 207 / 2e-70 Ribosomal protein S10p/S20e family protein (.1) Lus10031705 [exp] 58 / 5e-11 AT5G62300 211 / 5e-72 Ribosomal protein S10p/S20e family protein (.1.2) Lus10038910 [exp] 57 / 2e-10 AT5G62300 210 / 8e-72 Ribosomal protein S10p/S20e family protein (.1.2) Lus10027194 [exp] 49 / 2e-07 AT5G62300 207 / 2e-70 Ribosomal protein S10p/S20e family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G092800 [exp] 244 / 7e-83 AT3G13120 231 / 1e-77 Ribosomal protein S10p/S20e family protein (.1.2) Potri.001G365600 [exp] 242 / 9e-82 AT3G13120 237 / 4e-80 Ribosomal protein S10p/S20e family protein (.1.2) Potri.002G146600 [exp] 56 / 2e-10 AT3G47370 204 / 1e-69 Ribosomal protein S10p/S20e family protein (.1.2.3) Potri.012G128300 [exp] 56 / 3e-10 AT5G62300 222 / 2e-76 Ribosomal protein S10p/S20e family protein (.1.2) Potri.015G129800 [exp] 56 / 5e-10 AT5G62300 223 / 9e-77 Ribosomal protein S10p/S20e family protein (.1.2) Potri.002G116900 [exp] 40 / 6e-05 AT3G47370 125 / 4e-39 Ribosomal protein S10p/S20e family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00338 [flax] [poplar] Ribosomal_S10 Ribosomal protein S10p/S20e
Representative CDS sequence Show only first row Show all	>Lus10016604 pacid=23143950 polypeptide=Lus10016604 locus=Lus10016604.g ID=Lus10016604.BGIv1.0 annot-version=v1.0 ATGGTGGTCACTTCCGTCTCTGCGTCGCTCATTTCTTCGATATCTATTTCAAGCTCCTCTTCCTTCTCCTCCTCCTCCAAAACGACTCTTTCTTCTTTAC CAAAGCTCTCATTTGTCCCATTTCCTTTATCCAAGCTAAAACCCTCACTGCCGAGCTCGTCTTCAACCAGGGTCTTCGCAGCTCCTGAGCTTTTGAATTC CCAGGAAACCCTAGAATCTGATTCCGGAAAATATGAGGTTGCGAATTCTGAGACTCCCAGTTCTTCATCACTTAGCATTGATGCTGATGCAGACACGATG GCTCCGAAGCAGAAGATCAGAATTAAACTCAGGTCTTACTTTGTGCCTTTGATTGAAGATTCCTGCAAGCAGATAATGGATGCTGCTAAGAATACAAATG CAAAAACCATGGGGCCTGTGCCTTTACCAACAAAGAAGCGTATCTACTGTGTTCTGAAATCCCCCCATGTACACAAGGATGCACGGTTTCATTTTGAAAT TCGGACTCACCAGAGGTTAATAGATATTCTCTACCCGACTGCCCAAACCATCGACTCCCTGATGCAACTTGACCTCCCAGCTGGTGTGGACGTGGAGGTC AAGCTATGA
AA sequence Show only first row Show all	>Lus10016604 pacid=23143950 polypeptide=Lus10016604 locus=Lus10016604.g ID=Lus10016604.BGIv1.0 annot-version=v1.0 MVVTSVSASLISSISISSSSSFSSSSKTTLSSLPKLSFVPFPLSKLKPSLPSSSSTRVFAAPELLNSQETLESDSGKYEVANSETPSSSSLSIDADADTM APKQKIRIKLRSYFVPLIEDSCKQIMDAAKNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEV KL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10016604 [exp]	0	1
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10005553 [exp]	1.0	0.9891
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10038770 [exp]	1.4	0.9836
AT5G66470			RNA binding;GTP binding (.1)		Lus10014289 [exp]	3.0	0.9776
AT5G54600			Translation protein SH3-like f...		Lus10038125 [exp]	3.5	0.9768
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015110 [exp]	3.7	0.9668
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10039092 [exp]	3.9	0.9765
AT2G21385			unknown protein		Lus10017494 [exp]	4.0	0.9664
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Lus10002916 [exp]	5.5	0.9695
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Lus10040693 [exp]	6.3	0.9641
AT5G39530			Protein of unknown function (D...		Lus10024051 [exp]	6.7	0.9646

Compare expression of checked genes

Lus10016604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.