Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55590 409 / 3e-142 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT5G47500 288 / 2e-95 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT5G19730 278 / 9e-91 Pectin lyase-like superfamily protein (.1) AT2G36710 239 / 2e-75 Pectin lyase-like superfamily protein (.1) AT1G05310 231 / 1e-72 Pectin lyase-like superfamily protein (.1) AT2G21610 219 / 2e-68 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT3G17060 214 / 8e-67 Pectin lyase-like superfamily protein (.1) AT5G07420 208 / 4e-64 Pectin lyase-like superfamily protein (.1) AT5G07430 207 / 1e-63 Pectin lyase-like superfamily protein (.1) AT1G69940 204 / 2e-62 ATPPME1 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007113 [exp] 301 / 8e-103 AT5G55590 209 / 6e-67 QUARTET 1, Pectin lyase-like superfamily protein (.1) Lus10004720 [exp] 284 / 3e-93 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 268 / 1e-87 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 268 / 5e-87 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10009997 [exp] 260 / 2e-84 AT5G19730 320 / 1e-107 Pectin lyase-like superfamily protein (.1) Lus10012942 [exp] 259 / 1e-83 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 253 / 5e-81 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10026347 [exp] 250 / 2e-80 AT2G21610 399 / 2e-139 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10043035 [exp] 248 / 1e-79 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G365700 [exp] 456 / 2e-160 AT5G55590 429 / 1e-149 QUARTET 1, Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 283 / 4e-93 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 281 / 3e-92 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.018G068400 [exp] 274 / 2e-89 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G117100 [exp] 258 / 5e-83 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1) Potri.016G017700 [exp] 241 / 2e-76 AT1G05310 511 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G120100 [exp] 238 / 5e-75 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.004G156300 [exp] 236 / 5e-75 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.012G113433 [exp] 229 / 4e-72 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G113533 [exp] 228 / 8e-72 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10016605 pacid=23143936 polypeptide=Lus10016605 locus=Lus10016605.g ID=Lus10016605.BGIv1.0 annot-version=v1.0 ATGATCTTGAGAAAGTGGTCTGCTATTGGACTTGTTGTGTTGGCTTGGGCAATGCTGTTTGTTGGGGTTAGTAGTACTGCCCAATTTCCTTCACCGGAAA TTCAGAACTTGGTTAAGAATTTCATAAGCTGGGAAGACACGAGGTTGGATGCAGGTTATGAGTATGGTGGGAAGAGCAGGCCGAGTTACAGGGAAGAGTA TTTCAGAGGAAGTCGACTAATTGTAGTTGACCCAAATGGCGGCGGGGACTCCATCACCGTTCAAGGTGCAGTGGATTTGGTGCCGGACTTCAACAATCAG AGGGTTAAAATCCACATTCGCCCTGGAGTGTACAGGGAGAAGGTAGTTGTGCCGGTTACAAAGGCGTACATATCGTTGATTGGGAATGCAAGCGACGTGA CAACGACAGTGATAACATGGCACAACAAAGCTTCTGATTTGGATTCTAATGGGAATGAGCTTGGTACTTTTAGGTCAGCATCAGTCACCGTTTCCTCTGA TTATTTCTGCGCCACAGGGATCACTTTCCAGAATTCGGCGGTGGCAGTAGCAGGAGGGCATGGGATGCAAGCAGTGGCGCTGAGAGTGTCAGGGGACAAA GCATTCTTCTACAGAGTTAAGATTGTTGGCTCACAGGACACCCTTTTGGACGACACTGGTTCACATTACTATTACCAGTCTCACATTCTTGGAAGCATTG ATTTTATATTTGGTCGTGGAAGGTCTCTCTTTCAGGATTGCGTAGTGGAATCGAAAGCTGAAAGGTACGGAGCGATTGCAGCTCACCACAGAGATTCGGG AAACGAGGAGACTGGTTTCTCCTTCGTAGGGTGCTTAATCAGAGGAACTGGCAAGATTCTATTGGGAAGAGCTTGGGGGAATTACTCGAGGGCCATCTAT TCTTACTGTCAAATTGAAGACATGATCACCCCTGAAGGATGGAGTGATTGGGATGTACCTGACAGACGAAAAACTGCAGTATTTGGAGAGTACAGATGCA AGGGAAGAGGAGCAGATACCAGGGGAAGAGTAGCTTGGTCCAAGACCAACTTCACACTTGAACAAGTTAGACCATTCTTGGACCTCAGATTCATAGATGG ACACCAGTGGCTCAGACTCTAG
AA sequence Show only first row Show all	>Lus10016605 pacid=23143936 polypeptide=Lus10016605 locus=Lus10016605.g ID=Lus10016605.BGIv1.0 annot-version=v1.0 MILRKWSAIGLVVLAWAMLFVGVSSTAQFPSPEIQNLVKNFISWEDTRLDAGYEYGGKSRPSYREEYFRGSRLIVVDPNGGGDSITVQGAVDLVPDFNNQ RVKIHIRPGVYREKVVVPVTKAYISLIGNASDVTTTVITWHNKASDLDSNGNELGTFRSASVTVSSDYFCATGITFQNSAVAVAGGHGMQAVALRVSGDK AFFYRVKIVGSQDTLLDDTGSHYYYQSHILGSIDFIFGRGRSLFQDCVVESKAERYGAIAAHHRDSGNEETGFSFVGCLIRGTGKILLGRAWGNYSRAIY SYCQIEDMITPEGWSDWDVPDRRKTAVFGEYRCKGRGADTRGRVAWSKTNFTLEQVRPFLDLRFIDGHQWLRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55590		QRT1	QUARTET 1, Pectin lyase-like s...		Lus10016605 [exp]	0	1
					Lus10035120 [exp]	1.0	0.9956
AT1G73120			unknown protein		Lus10022961 [exp]	2.0	0.9789
AT1G40087			Plant transposase (Ptta/En/Spm...		Lus10007402 [exp]	3.5	0.8960
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10033355 [exp]	3.9	0.9415
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10024978 [exp]	4.7	0.8565
					Lus10017551 [exp]	4.9	0.9339
AT3G05610			Plant invertase/pectin methyle...		Lus10006940 [exp]	5.2	0.8787
					Lus10014692 [exp]	5.5	0.9179
AT5G66580			unknown protein		Lus10000739 [exp]	5.5	0.8268
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10034573 [exp]	6.2	0.8331

Compare expression of checked genes

Lus10016605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.