Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55600 606 / 0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein AT1G68580 248 / 2e-72 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT4G17330 79 / 7e-15 ATG2484-1 G2484-1 protein (.1) AT1G26540 67 / 3e-11 Agenet domain-containing protein (.1) AT1G09320 61 / 2e-09 agenet domain-containing protein (.1) AT5G58610 61 / 3e-09 PHD finger transcription factor, putative (.1) AT1G11420 55 / 2e-07 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) AT1G06340 45 / 2e-05 Plant Tudor-like protein (.1) AT2G47230 46 / 0.0001 ATDUF6 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007115 [exp] 1315 / 0 AT5G55600 606 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Lus10003906 [exp] 429 / 4e-141 AT5G55600 455 / 3e-152 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Lus10007793 [exp] 75 / 2e-13 AT4G17330 508 / 1e-147 G2484-1 protein (.1) Lus10004730 [exp] 71 / 4e-12 AT4G17330 772 / 0.0 G2484-1 protein (.1) Lus10000353 [exp] 70 / 5e-12 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10000615 [exp] 69 / 8e-12 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10031429 [exp] 64 / 2e-10 AT1G09320 131 / 2e-33 agenet domain-containing protein (.1) Lus10010903 [exp] 63 / 5e-10 AT1G09320 136 / 3e-35 agenet domain-containing protein (.1) Lus10009266 [exp] 56 / 1e-08 AT1G06340 86 / 2e-21 Plant Tudor-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G365800 [exp] 724 / 0 AT5G55600 663 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.006G017400 [exp] 524 / 1e-177 AT5G55600 493 / 1e-166 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.016G007500 [exp] 499 / 4e-168 AT5G55600 491 / 7e-166 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.008G119400 [exp] 293 / 1e-88 AT1G68580 459 / 9e-154 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.010G126700 [exp] 288 / 9e-87 AT1G68580 478 / 1e-160 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.003G077600 [exp] 77 / 3e-14 AT4G17330 773 / 0.0 G2484-1 protein (.1) Potri.013G006900 [exp] 66 / 4e-11 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.005G011100 [exp] 66 / 4e-11 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.009G072600 [exp] 66 / 6e-11 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.002G192300 [exp] 60 / 6e-09 AT1G26540 201 / 3e-54 Agenet domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01426 [flax] [poplar] BAH BAH domain CL0049 [flax] [poplar] Tudor PF05641 [flax] [poplar] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Lus10016606 pacid=23144002 polypeptide=Lus10016606 locus=Lus10016606.g ID=Lus10016606.BGIv1.0 annot-version=v1.0 ATGAGTGCAAATGGCAGTTTTTTTGTGGAATGGAAAGAACAATTTGTTTCACAAGAGCGTGGGAACCGTGTGGTTCACTATTTCCTGAAAGATTCTGCCG GAGAATTCATCCTTGCCGTTGTGGGTACTGAGAGGAGTGTTAGACACATGTTCTATGTCGTTGCTGAGGAGTTTGTACAAGCTTACGGTGCTGAAAACTC CATTCATGTTGGCTTTAAATGGAGGTCGAGAAGAGAGGTTGTTGATTGGCTTACGTCTATGCTGTCAAAGCAGCATGTACAAGGCGATCATCCCAGGCTG CAAAAATGTGATCTAGGACAAGCTTTAGAGCCGCAAGAGTTTCCTGCAACTAGTTTCGACTGTCAGCAGATGCAGGGCCGGCATTTACGGATTGTGAATG GGCATCGTTCAAATATTGTATGGTCTGGTGTTTCTTGGACTTGTGGGAAGCAGCTCAAGCATTTCCCAGCATTTTGTAGAAATGGAACTACAATAGCACT TGCACTTTTTCATATGGGCACAAACATGTTCTTATCTGTGGTGCGGTCAAATTTTAGGGTTTTATCTCGTGTGCTTCAGATGTTAGCTTTCATTGTCATC GACTTTGCTGAATCAACTTTCTTCTTTGACCAGACTCAATCGTTTGTCTTTGTGATGGCTAAAGGCGAGAATCATTATGTTTCCTATTTAGAAGACATGT ACGAAGACAGGAGGGGCCAGAAAAAGGTCAAAGTTAGATGGTTTCACCATAACCAAGAAGTCAAGGGTGTGATTCCTCTTCGAAACGTGCATCCAAAAGA AATTTTCATCACACCGTATTCACAAGTCATAAGTGCAGAGTGTATTGATGGTCCAGCCACTGTTTTAACTCGTGAACATTATGAGGAATGTGTGGCTTCT ATTCCCAGTTCCTTCTCAACCAGAATTCATTTATGCTTTAGGCAGTTTCGGGGCAATAAAGTTAAATCTTATGATTTGAGTAAACTGCGTGGCTATTTTG ATCAAGCTATGTTCTCTTGCTTGAATTCAAAGCATTTTGTTGAGGTTGATGATCCTGGAGATGGTACAAATGGTGAAGAAGATGAAGGATTGAGTGCAGG GGAAATGGAAAAGCTCGGAGTAAAGAGGGCCCGAACCAGTGACGGGCGTCCATATTTTGAGAATGATGCCAGCATAATGGCTACATTTCGTCCATTTTAT TCGGCTATGAGACCTGGTTTTGCTGGAAATCGTTTGATTCATCGTAAAAACATTGGACTGTTCGGGGTCAACGAGAAGATTGAACATTTATGCCAAGATA GTGGAATTCGGGGCTGCTGGTTCAGGTGTACGGTCCTGCAGGTTTCTCAAAGACAAATAAAGGTGCGATATGATGACTTACTGGATGAAGAAAAGGGTGG AAACCTTGAGGAATGGATCCCAGCTTCCAAATTAGCGGTGGCTGATAAACTTGGCATGAGACATTTGGGCCGCCCAACTGTTCGACCCGCCCCTCTGTAC AAAGAAACAGACGTGGGTTTTGGAGTTGGCTCTGCTGTTGATGCATGGTGGAGCGATGGTTGGTGGGAGGGAGTTGTGACCAGCAAAAATGAGGGCTGCA ACGACGTGATGCAAGTTTACTTTCCTGGTGAAAAGTTCATTTTGAACATGAAGAGAAAGGATTTGAGAACTTCACGTGATTGGGTGGATGAGCAGTGGGT TGATATCCAGGGAAAACCAGACATACTCGCAGGAGTATATGCAACCATCGTCCCCGACATAAAGATGCCCATATATTCTTCACCTACTGCAATGGCCAAA AAATGTGATGACTTCCCTGCAATAATCGACCAGCCCCATGATGTTACCCATGAGGAACAAACTACTGAAACTATATTAATAAGCTCCGATAGTCTTCAGA TAGGTGTGGACTCTGACAATCCGGAGCAGCCAATTTCAACTGAGGAACCTATGGAATGTGATGCTGGGCAGCAGGCTACATTGAATGACAAGGCTGGTGC AGATAGTGGTAGTGATGATATGAATGTTAATCTTGATAGAATGGATAATCTTGTGTCTGATGCTGTACTTCCTCTAGTTGACAAAGTTGCTGAAATGGAA GTTAGTAATGACGGTGCAGATGATGCTGATGTCAATAACAATGGCAAGAAGCTGGATAAGGAGGCGTTTGCATCTTCTGGTAACAGTTGTAAATCAATAC AAGTCATGGAAGTGTCATCTTAA
AA sequence Show only first row Show all	>Lus10016606 pacid=23144002 polypeptide=Lus10016606 locus=Lus10016606.g ID=Lus10016606.BGIv1.0 annot-version=v1.0 MSANGSFFVEWKEQFVSQERGNRVVHYFLKDSAGEFILAVVGTERSVRHMFYVVAEEFVQAYGAENSIHVGFKWRSRREVVDWLTSMLSKQHVQGDHPRL QKCDLGQALEPQEFPATSFDCQQMQGRHLRIVNGHRSNIVWSGVSWTCGKQLKHFPAFCRNGTTIALALFHMGTNMFLSVVRSNFRVLSRVLQMLAFIVI DFAESTFFFDQTQSFVFVMAKGENHYVSYLEDMYEDRRGQKKVKVRWFHHNQEVKGVIPLRNVHPKEIFITPYSQVISAECIDGPATVLTREHYEECVAS IPSSFSTRIHLCFRQFRGNKVKSYDLSKLRGYFDQAMFSCLNSKHFVEVDDPGDGTNGEEDEGLSAGEMEKLGVKRARTSDGRPYFENDASIMATFRPFY SAMRPGFAGNRLIHRKNIGLFGVNEKIEHLCQDSGIRGCWFRCTVLQVSQRQIKVRYDDLLDEEKGGNLEEWIPASKLAVADKLGMRHLGRPTVRPAPLY KETDVGFGVGSAVDAWWSDGWWEGVVTSKNEGCNDVMQVYFPGEKFILNMKRKDLRTSRDWVDEQWVDIQGKPDILAGVYATIVPDIKMPIYSSPTAMAK KCDDFPAIIDQPHDVTHEEQTTETILISSDSLQIGVDSDNPEQPISTEEPMECDAGQQATLNDKAGADSGSDDMNVNLDRMDNLVSDAVLPLVDKVAEME VSNDGADDADVNNNGKKLDKEAFASSGNSCKSIQVMEVSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55600			agenet domain-containing prote...		Lus10016606 [exp]	0	1
AT3G59910			Ankyrin repeat family protein ...		Lus10010581 [exp]	2.0	0.8710
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10032476 [exp]	2.0	0.8562
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031221 [exp]	2.4	0.8605
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Lus10032327 [exp]	4.0	0.8374
AT2G44200			CBF1-interacting co-repressor ...		Lus10038730 [exp]	6.5	0.8273
AT1G80400			RING/U-box superfamily protein...		Lus10023112 [exp]	8.9	0.8267
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Lus10011116 [exp]	8.9	0.7860
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10009891 [exp]	9.2	0.8147
AT5G55600			agenet domain-containing prote...		Lus10007115 [exp]	11.4	0.8585
AT5G47940			unknown protein		Lus10019713 [exp]	11.7	0.7671

Compare expression of checked genes

Lus10016606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.