Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55915 427 / 1e-148 zinc ion binding (.1) AT5G35690 72 / 2e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037337 [exp] 212 / 2e-66 AT1G55915 214 / 5e-68 zinc ion binding (.1) Lus10035761 [exp] 135 / 5e-39 AT1G55915 134 / 4e-39 zinc ion binding (.1) Lus10035762 [exp] 133 / 1e-36 AT1G55915 155 / 2e-45 zinc ion binding (.1) Lus10000922 [exp] 71 / 4e-13 AT5G35690 575 / 0.0 unknown protein Lus10002262 [exp] 71 / 6e-13 AT5G35690 585 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G092900 [exp] 450 / 5e-157 AT1G55915 429 / 5e-149 zinc ion binding (.1) Potri.008G009700 [exp] 323 / 6e-109 AT1G55915 314 / 2e-105 zinc ion binding (.1) Potri.010G249400 [exp] 177 / 1e-52 AT1G55915 157 / 3e-45 zinc ion binding (.1) Potri.014G160400 [exp] 70 / 1e-12 AT5G35690 440 / 2e-146 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF08325 [flax] [poplar] WLM WLM domain
Representative CDS sequence Show only first row Show all	>Lus10016607 pacid=23143973 polypeptide=Lus10016607 locus=Lus10016607.g ID=Lus10016607.BGIv1.0 annot-version=v1.0 ATGGATTCGGGAGATCTGCACAAAGTCTGGGAAGTCAGAGCCCTAAAGAGGAAGCCGGCGGCGGATGAAGCCCAGAAAATGCTTGACAAAATAGCTAAGC AGGTCCAACCCATCATGCGCAAACACAAATGGCGCGTCAAGCTTCTCTGCGAATTCTGTCCAAGCAACCCAACACTTCTGGGGCTGAATGTAAATTGTGG TGTGAGTGTGAAGCTCAGGCTTCGTAGACCAAATAGGGATTTGGATTTCTATCCATACGATCAGGTGCTTGATACAATGCTGCATGAACTTTGTCACAAC GCTCACGGTCCTCACAATGCTAATTTCTACAAGCTCTGGGATGAGCTCAGAAAGGAATGCGAGGAGTTAATATCCAAAGGAATAAGTGGAACTGGAGATG GTTTTGATCTACCAGGAAGGCGTTTGGGTGGGTTTTCCCGTCAGCCTCCTTTGACCGTACTTCGCCAAACTGCTATAGCTGCTGCAGAGAAGAGAGCAAA ATTAAGATCTATGCTGCCATCTGGGCCAAAACGTCTGGGTGGTGATAGCAATATAATGGATGCACTCACTCCAGTACAAGCTGCAGCAATGGCTGCAGAA AGGAGATTGCAGGATGATTTATGGTGTGCTTCTCAGTTAGTTGAAGTTTCTGATGATGAAGAAGACATGTGTGATGAAGCGAAAGACATTTCATCTATAG GGCCAAGTTCGGGAAGCTCAAGCCGTAATGCCGGTCGAAAAAGAAGTCGTGAACCAAGTAACAATACAGCTTATCCATCTTCAGCTAGTCAGACCTGTTC AAATAAATCCTCCAAGGATGTTTTAGCATCTGAAGCTGGACCTGTTTATCCCCCAAACTCGAAAATAAAAAGTAACGGAAAAGTGAATTTTCTAAAGTGG TTATCGTTTATGCTTTTATCTTGTGGGTTAAGTTTTGTTTTGGCATTTTGTTGCATAGTTGATACAGGTGCAGCACATTTCACAAATGATCCTGGCATGT GGGAATGTGGAATTTGTACCCTATTGAATCCTCCGTTAGCTCCAATATGCAAACTCTGCAACACAGAAAGGCCTAATGATGATGGTAGCAAGCAAAAGGC ATGGTACTGCCGGTTCTGTACTCTGGAAAACAGCGTGAAATTGGACAAGTGTTGTGCGTGTGAGCAATGGAGATACTCGTACGGTGCCCCAATGTCTGCT CATACACCATTCAAGGGCACATAA
AA sequence Show only first row Show all	>Lus10016607 pacid=23143973 polypeptide=Lus10016607 locus=Lus10016607.g ID=Lus10016607.BGIv1.0 annot-version=v1.0 MDSGDLHKVWEVRALKRKPAADEAQKMLDKIAKQVQPIMRKHKWRVKLLCEFCPSNPTLLGLNVNCGVSVKLRLRRPNRDLDFYPYDQVLDTMLHELCHN AHGPHNANFYKLWDELRKECEELISKGISGTGDGFDLPGRRLGGFSRQPPLTVLRQTAIAAAEKRAKLRSMLPSGPKRLGGDSNIMDALTPVQAAAMAAE RRLQDDLWCASQLVEVSDDEEDMCDEAKDISSIGPSSGSSSRNAGRKRSREPSNNTAYPSSASQTCSNKSSKDVLASEAGPVYPPNSKIKSNGKVNFLKW LSFMLLSCGLSFVLAFCCIVDTGAAHFTNDPGMWECGICTLLNPPLAPICKLCNTERPNDDGSKQKAWYCRFCTLENSVKLDKCCACEQWRYSYGAPMSA HTPFKGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55915			zinc ion binding (.1)		Lus10016607 [exp]	0	1
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Lus10027766 [exp]	1.7	0.7518
AT4G23060		IQD22	IQ-domain 22 (.1)		Lus10024498 [exp]	9.9	0.6809
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Lus10032500 [exp]	10.2	0.6725
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10017479 [exp]	12.2	0.6966
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10026497 [exp]	37.7	0.5692
AT1G79020			Enhancer of polycomb-like tran...		Lus10033318 [exp]	51.9	0.6420
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10040567 [exp]	61.0	0.6183
AT1G60200			splicing factor PWI domain-con...		Lus10013003 [exp]	71.2	0.6291
AT1G51610			Cation efflux family protein (...		Lus10033367 [exp]	95.3	0.5961
AT1G51940			protein kinase family protein ...		Lus10027677 [exp]	97.1	0.5710

Compare expression of checked genes

Lus10016607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.