Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55610 266 / 2e-87 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004412 [exp] 462 / 5e-163 AT5G55610 332 / 4e-112 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G366000 [exp] 342 / 2e-117 AT5G55610 327 / 2e-111 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016608 pacid=23143971 polypeptide=Lus10016608 locus=Lus10016608.g ID=Lus10016608.BGIv1.0 annot-version=v1.0 ATGGCAGGTATTGCAATTTTGTTGGATCTATTGAAGAAAAATCCCAGCTCTTATTCGACCCAGTTGTCGGCCTCTGCCGCTGTTACGGCCGCAGCTGCCT CCGTCGCTGCTGCAAGCACCCCTTTTGCCTCCAGATTCTTGTTCGGGCTCACAAATATCGTTGTGTACATGCTTTTATCTAATTTGTTTGTCTATGCATT GACGCTGCTTATTGCCCATCCCAGTTCTCCGGAATTTCCAGTTGCTTACTGTGACGCTGGTGCTGCTGCAATATCTGATGACTATATATCAGCAATCCGA AGTGCCTCTACCAATGTTTTCCACCATGATTCTCTCAAGTACTCCACCAAGGAATATTACTTCGATGTGAAACCCTTGTTTTCAGCTTTTGAAGTCAAGC AACTGGCTGTGACATCATTGAGGTCTTTCTTGATGTATTATTTGCCTCTTCTGGAGCCTAGCATACATACCGAAGAAGAGGATGATGACTTCCTTCAGGA TGTGAAAGATGACAAGCCTGTTGATCTGGTTGTCCCTTTCAAAAAATCAGTGAAGCAAATTGCACGGGAGACAACGGTGGTGACTACAAGGCGGATGTTA GAACGACTTGCTGTCCATTATGTTTCACAACGAATGGCATGGAAACTTCTTAAAGAGATCCCCAAATCAGCCCAGCGAAAGGCTCAAAGAGGATTGCCTA CCACCATTTACATCTTCAGAGTTAGTAGAACGACTTTTAGAGGACACTTTTTAGGAGTTGCTGCGTCATGGATTGTCCAAGTCGGTATCGAAACTTACCG GTTCTTTAATCGTTTGACGAAATCTGAAGACGCAAGCAACCAAGTTGAGCGATCAGCACAAGTTCTTGGCAAGAAAGTTGCTGGTGTAACTCTGAGGTGC GGCGCATCACTTGTTTTTGCAGCCATAGGGGCTGGGATCACTGCCGCCATCATCCAACCTAATAATGGTCAATGGATTGGGTGTTCCATTGGTGATCTGG CTGGGCCAATAATCGTTACAGTCTTCCTCGAGAAAGCTCTCCAAATCGAGCTTTAG
AA sequence Show only first row Show all	>Lus10016608 pacid=23143971 polypeptide=Lus10016608 locus=Lus10016608.g ID=Lus10016608.BGIv1.0 annot-version=v1.0 MAGIAILLDLLKKNPSSYSTQLSASAAVTAAAASVAAASTPFASRFLFGLTNIVVYMLLSNLFVYALTLLIAHPSSPEFPVAYCDAGAAAISDDYISAIR SASTNVFHHDSLKYSTKEYYFDVKPLFSAFEVKQLAVTSLRSFLMYYLPLLEPSIHTEEEDDDFLQDVKDDKPVDLVVPFKKSVKQIARETTVVTTRRML ERLAVHYVSQRMAWKLLKEIPKSAQRKAQRGLPTTIYIFRVSRTTFRGHFLGVAASWIVQVGIETYRFFNRLTKSEDASNQVERSAQVLGKKVAGVTLRC GASLVFAAIGAGITAAIIQPNNGQWIGCSIGDLAGPIIVTVFLEKALQIEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55610			unknown protein		Lus10016608 [exp]	0	1
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10005890 [exp]	5.3	0.7669
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10016972 [exp]	5.5	0.8502
AT3G54750			unknown protein		Lus10015991 [exp]	6.3	0.8096
AT5G36230			ARM repeat superfamily protein...		Lus10029666 [exp]	9.5	0.7769
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10029779 [exp]	10.0	0.8140
AT5G51540			Zincin-like metalloproteases f...		Lus10031136 [exp]	13.6	0.8106
AT1G73930			unknown protein		Lus10042970 [exp]	21.4	0.7916
AT5G64470		TBL12	TRICHOME BIREFRINGENCE-LIKE 12...		Lus10007108 [exp]	23.2	0.7317
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10038696 [exp]	33.6	0.7125
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Lus10026110 [exp]	34.6	0.7449

Compare expression of checked genes

Lus10016608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.