Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55910 372 / 3e-129 ZIP11 zinc transporter 11 precursor (.1) AT5G59520 318 / 1e-107 ZIP2 ZRT/IRT-like protein 2 (.1) AT4G19680 75 / 6e-15 ATIRT2, IRT2 iron regulated transporter 2 (.1.2) AT4G19690 69 / 4e-13 ATIRT1, IRT1 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) AT1G31260 63 / 6e-11 ZIP10 zinc transporter 10 precursor (.1) AT2G30080 59 / 9e-10 ATZIP6, ZIP6 ZIP metal ion transporter family (.1) AT4G33020 58 / 3e-09 ATZIP9, ZIP9 ZIP metal ion transporter family (.1) AT5G45105 0 / 1 ZIP8 zinc transporter 8 precursor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004413 [exp] 545 / 0 AT1G55910 412 / 4e-145 zinc transporter 11 precursor (.1) Lus10041613 [exp] 66 / 5e-12 AT3G12750 397 / 1e-138 zinc transporter 1 precursor (.1) Lus10024107 [exp] 65 / 2e-11 AT3G12750 394 / 4e-137 zinc transporter 1 precursor (.1) Lus10006935 [exp] 61 / 3e-10 AT3G12750 295 / 2e-98 zinc transporter 1 precursor (.1) Lus10041647 [exp] 61 / 4e-10 AT3G12750 383 / 2e-132 zinc transporter 1 precursor (.1) Lus10014063 [exp] 50 / 1e-06 AT3G12750 262 / 2e-85 zinc transporter 1 precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G366100 [exp] 419 / 1e-147 AT1G55910 381 / 1e-132 zinc transporter 11 precursor (.1) Potri.001G366200 [exp] 397 / 5e-139 AT1G55910 379 / 1e-131 zinc transporter 11 precursor (.1) Potri.009G034600 [exp] 361 / 5e-125 AT5G59520 355 / 5e-122 ZRT/IRT-like protein 2 (.1) Potri.015G117900 [exp] 67 / 2e-12 AT4G19690 443 / 2e-156 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) Potri.015G117700 [exp] 65 / 9e-12 AT1G31260 436 / 5e-154 zinc transporter 10 precursor (.1) Potri.009G074100 [exp] 62 / 2e-10 AT2G30080 360 / 2e-124 ZIP metal ion transporter family (.1) Potri.001G279300 [exp] 59 / 9e-10 AT2G30080 378 / 2e-131 ZIP metal ion transporter family (.1) Potri.006G006800 [exp] 58 / 3e-09 AT1G05300 322 / 6e-109 zinc transporter 5 precursor (.1.2) Potri.001G160400 [exp] 52 / 3e-07 AT3G12750 320 / 5e-108 zinc transporter 1 precursor (.1) Potri.008G083100 [exp] 51 / 5e-07 AT3G12750 350 / 7e-120 zinc transporter 1 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF02535 [flax] [poplar] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Lus10016609 pacid=23143977 polypeptide=Lus10016609 locus=Lus10016609.g ID=Lus10016609.BGIv1.0 annot-version=v1.0 ATGTCTCGTTTTCTCTTCCTTTCCTTCTTCTTCCTCTCCCTCCTTCTCCTGGCCGCCTCCCACGGCGGAGGCGATGATGACGACGATGAGGCTTCTTCCT CCGAGCCGGCGGTCAACCTTCGTTCCAAATCCTTGATCCTAGCAAAAGTCTGGTGCTTGATACTGGTCTTCTTGGCAACTTTTGCTGGAGGGGTGTCTCC TTATTTTCTGAAATGGAACCAAGGGTTCCTGTTGTTGGGGACTCAGTTCGCCGGCGGCGTCTTCTTAGGGACAGCTCTGATGCATTTCTTGAGCGACGCC AACGACACTTTTGAGGACTTGACAACTAAAGAATACCCTTTTGCTTTCATGCTTGCCTCCGCCGGCTACTTGATCACCATGCTCGCTGATTCTCTCATCT CTTATGTTTACTCCAAGGACGCTGATTTGGAAGAAGCAAAGGAGGAGACTGACGCCAGCTACGTTCAGGGGCACAACGACTCAATTGGAACCGCACGTTC ATTTGGGGACAGCATTCTGCTTATAGTGGCACTCTGTTTCCACTCGGTGTTTGAAGGGATAGCTATAGGAGTTGCTGAGACCGAGGGAGATGCCTGGAAA GCTCTATGGACCATTTCCCTTCACAAGATCTTTGCAGCCATTGCAATGGGAATCGCCCTTCTCCGAATGATCCCCGACCGCCCTTTCTTATCGTGCGCCG CTTACGCCTTTGCATTTGCCATCTCAAGTCCCATTGGAGTTGCAATTGGGATCGTGATTGATGCCACCACTCAGGGGAAGGTCGCCGACTGGACCTTTGC AATCTCGATGGGGCTCGCTTGCGGGGTGTTCATTTACGTGTCGATAAATCATCTTCTGTCCAAGGGATATACTCCACAAGGAGGAGTAGCAGCCTCCATT GACAAGCTACATTACAAGGCCTTGGCTGTATCGGTCGGTGTAGCTGTGATTGCAGTAGTCATGATCTGGGACACCTGA
AA sequence Show only first row Show all	>Lus10016609 pacid=23143977 polypeptide=Lus10016609 locus=Lus10016609.g ID=Lus10016609.BGIv1.0 annot-version=v1.0 MSRFLFLSFFFLSLLLLAASHGGGDDDDDEASSSEPAVNLRSKSLILAKVWCLILVFLATFAGGVSPYFLKWNQGFLLLGTQFAGGVFLGTALMHFLSDA NDTFEDLTTKEYPFAFMLASAGYLITMLADSLISYVYSKDADLEEAKEETDASYVQGHNDSIGTARSFGDSILLIVALCFHSVFEGIAIGVAETEGDAWK ALWTISLHKIFAAIAMGIALLRMIPDRPFLSCAAYAFAFAISSPIGVAIGIVIDATTQGKVADWTFAISMGLACGVFIYVSINHLLSKGYTPQGGVAASI DKLHYKALAVSVGVAVIAVVMIWDT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10016609 [exp]	0	1
AT1G65720			unknown protein		Lus10010961 [exp]	1.4	0.9297
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10035359 [exp]	1.4	0.9207
AT3G22750			Protein kinase superfamily pro...		Lus10022076 [exp]	1.7	0.9152
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007284 [exp]	2.2	0.8918
AT2G17570			Undecaprenyl pyrophosphate syn...		Lus10032757 [exp]	2.8	0.9003
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10006986 [exp]	3.2	0.8864
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10003159 [exp]	3.3	0.8863
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10000196 [exp]	4.1	0.8804
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10008743 [exp]	7.2	0.8746
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Lus10003398 [exp]	8.4	0.8689

Compare expression of checked genes

Lus10016609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.