Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55900 409 / 2e-142 TIM50, EMB1860 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT1G29770 83 / 7e-18 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29780 81 / 2e-17 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G45700 74 / 6e-15 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G55960 74 / 1e-14 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G11860 73 / 3e-14 SSP5 SCP1-like small phosphatase 5 (.1.2.3.4) AT4G18140 62 / 2e-10 SSP4b SCP1-like small phosphatase 4b (.1.2.3) AT5G46410 60 / 9e-10 SSP4 SCP1-like small phosphatase 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004414 [exp] 696 / 0 AT1G55900 411 / 1e-143 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10043165 [exp] 520 / 0 AT1G55900 380 / 2e-131 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10032582 [exp] 511 / 0 AT1G55900 378 / 2e-130 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10028284 [exp] 89 / 8e-20 AT3G55960 383 / 2e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10009890 [exp] 85 / 2e-18 AT3G55960 445 / 9e-159 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10014844 [exp] 85 / 3e-18 AT3G55960 441 / 2e-157 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10007321 [exp] 79 / 4e-16 AT5G45700 206 / 3e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10029273 [exp] 78 / 6e-16 AT5G45700 211 / 4e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10004596 [exp] 75 / 2e-14 AT5G46410 398 / 3e-135 SCP1-like small phosphatase 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G093000 [exp] 496 / 4e-177 AT1G55900 415 / 5e-145 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.001G364500 [exp] 495 / 9e-177 AT1G55900 405 / 3e-141 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.011G072000 [exp] 90 / 3e-20 AT5G45700 230 / 5e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.004G062900 [exp] 87 / 3e-19 AT5G45700 194 / 1e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G188500 [exp] 82 / 1e-17 AT3G55960 406 / 8e-144 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G068800 [exp] 82 / 2e-17 AT3G55960 342 / 3e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G353700 [exp] 80 / 5e-16 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.011G078300 [exp] 74 / 2e-14 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.003G173700 [exp] 73 / 7e-14 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.006G100800 [exp] 68 / 2e-12 AT3G55960 304 / 6e-103 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10016610 pacid=23143989 polypeptide=Lus10016610 locus=Lus10016610.g ID=Lus10016610.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCTATCCTTCGATCTCGCATCGTCTCCATCATTTCGAGATACAAACTGTCCGCTCTCCGCCGATCTTTCAGCTCCGATGCTACTTCTTCCA AGCCAACCAAAGAATCCATCATTTCCTCAGAATCGGCGGCCACAATGTCAGAGTCGGTGGACCCTGTAGCGGCTCGTGCTTCCGACAGACGTCCGGAGAG CATAGGATGGAAGCTCTTTAAGTATGGACTGATCGGCACTCTCACTGGCGCTACTGCTTTTACCGGCTACGTGACATACGCATATCCATTAGAGGAAGTA GAGAAGCGGACCAAGGCGTTGCGAGCATCGGTGAATCATGCTTCCAGCGATGAAACCTCTGGCGCAGAGAAATACTCAGACATGCTCTACTCAGCTGCAA TGACAGTACCCGCTAAAACAGCTGAGCTTTACTTGGATGTCCGTAAAACATTGGAGGAGCACGTGAAAGGTTTTACTGAGCCAACTTCAGACAAGCTTCT GCCGGATTTGCATCCAGCTGAGCAACATGTATTCACTCTTGTTTTGGATCTTAATGAGACAATAATATACAGTGACTGGACACGCGAAAGAGGCTGGCGA ACATTCAAAAGACCTGGAGTTGACGACTTCTTGCAACACCTTGCAAAGTTCTATGAGATTGTTATATACTCTGATCAACTGAGCATGTACGTTGATCCTG TTGTTGAAAGGTTGGATACAAACCATTGTATAAGATACAGGCTATCAAGAGGTGCAACCAAATATCAGGATGGGAAGCATTACCGGGATTTTTCCAAGCT AAATAGGGACCCTGGTAAGATAATATACGTGAGTGGCAATGCATTTGAGAGCAGCCTTCAACCAGAGAACTGTGTTCCAATCAAGCCATTTAAGATGGAT GACAAAAGCGAAGGGCCTCTGGATACAGCACTTTTGGATCTTATCCCTTTTCTTGAATATGTGGCGCGTAACAGTCCAGCTGATATTAGAGCAGTTCTGG CCACTTATGAAAGGAAGGACATAGCAAAAGAGTTCCTCGAGCGTTCCAAAGATTACCAAAGGCGATTGCAAGAACAGAAGCGTGTCTGGCGTCGATGA
AA sequence Show only first row Show all	>Lus10016610 pacid=23143989 polypeptide=Lus10016610 locus=Lus10016610.g ID=Lus10016610.BGIv1.0 annot-version=v1.0 MASSILRSRIVSIISRYKLSALRRSFSSDATSSKPTKESIISSESAATMSESVDPVAARASDRRPESIGWKLFKYGLIGTLTGATAFTGYVTYAYPLEEV EKRTKALRASVNHASSDETSGAEKYSDMLYSAAMTVPAKTAELYLDVRKTLEEHVKGFTEPTSDKLLPDLHPAEQHVFTLVLDLNETIIYSDWTRERGWR TFKRPGVDDFLQHLAKFYEIVIYSDQLSMYVDPVVERLDTNHCIRYRLSRGATKYQDGKHYRDFSKLNRDPGKIIYVSGNAFESSLQPENCVPIKPFKMD DKSEGPLDTALLDLIPFLEYVARNSPADIRAVLATYERKDIAKEFLERSKDYQRRLQEQKRVWRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10016610 [exp]	0	1
AT5G02610			Ribosomal L29 family protein ...		Lus10019180 [exp]	2.4	0.8256
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10009823 [exp]	3.7	0.8393
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10004414 [exp]	5.3	0.7800
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Lus10035745 [exp]	6.7	0.8251
AT2G18900			Transducin/WD40 repeat-like su...		Lus10036290 [exp]	8.4	0.8190
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10021150 [exp]	10.4	0.8075
AT3G16780			Ribosomal protein L19e family ...		Lus10023387 [exp]	10.4	0.8236
AT4G28450			nucleotide binding;protein bin...		Lus10037378 [exp]	10.5	0.7854
AT5G10110			unknown protein		Lus10022498 [exp]	13.0	0.8038
AT4G27090			Ribosomal protein L14 (.1)		Lus10003627 [exp]	14.7	0.7479

Compare expression of checked genes

Lus10016610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.