Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13170 367 / 7e-123 ATSPO11-1 Spo11/DNA topoisomerase VI, subunit A protein (.1) AT5G02820 130 / 2e-32 BIN5, RHL2 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) AT1G63990 80 / 9e-16 SPO11-2 sporulation 11-2 (.1) AT4G39400 54 / 3e-07 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT3G11010 43 / 0.0005 AtRLP34 receptor like protein 34 (.1) AT2G26380 43 / 0.0007 Leucine-rich repeat (LRR) family protein (.1) AT1G74360 43 / 0.001 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004416 [exp] 509 / 9e-179 AT3G13170 479 / 2e-170 Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10003996 [exp] 129 / 5e-32 AT5G02820 720 / 0.0 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10006817 [exp] 100 / 2e-21 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 95 / 7e-20 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10024675 [exp] 67 / 4e-12 AT1G63990 287 / 5e-97 sporulation 11-2 (.1) Lus10015052 [exp] 58 / 1e-08 AT5G02820 495 / 2e-176 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10020835 [exp] 48 / 3e-05 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10033533 [exp] 47 / 7e-05 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G366700 [exp] 404 / 2e-137 AT3G13170 499 / 2e-178 Spo11/DNA topoisomerase VI, subunit A protein (.1) Potri.006G132600 [exp] 128 / 6e-32 AT5G02820 700 / 0.0 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) Potri.001G099100 [exp] 74 / 5e-14 AT1G63990 603 / 0.0 sporulation 11-2 (.1) Potri.007G078100 [exp] 61 / 2e-09 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G086500 [exp] 59 / 8e-09 AT4G39400 1398 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.008G009300 [exp] 45 / 0.0002 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1) Potri.017G094400 [exp] 43 / 0.0008 AT3G02130 1405 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04406 [flax] [poplar] TP6A_N Type IIB DNA topoisomerase
Representative CDS sequence Show only first row Show all	>Lus10016612 pacid=23143992 polypeptide=Lus10016612 locus=Lus10016612.g ID=Lus10016612.BGIv1.0 annot-version=v1.0 ATGAGAATAGGAAAGTCAAAACCTCAGCTTGATCCATTTAAGAATTTCACCTCCCTCTTATCAATTGCTTCCCTAGCATCCTTGTCCCTTCGCTCTTCCA ACCTCATCGGCATCCTTGGCGGAGGAGAAAGAGGACTCAACTTCCCGCGGTGCAAGAAACAGGAGTATCTTGATATCTCGTCCAATAATTACTCTTCTTT GGGTCCTGATTTCGGCAGTAGATTTTTCGGTGAGTTTGACACTCTCCTTTCTAGCTGCGAGAAATTGGACTACCTCAACATATACGGCAATAGATTTTTC GGTGAGTTTGACACTCTCCTTTCTAGCTGCGAGAAATTGGACTACCTCAACATATACGGCAATAGATTTTTCGACTTCACTCGATCATTGGTGAAAGCTC TCAGCGGTGGACGATCGCCTACCATTACCATTGATAAATTCAGTAACTACTGCACTCATCCTCATGGAAACTGCTGCTGCGGTTCCGATATGCCTGAGGG ACAGGAGCTTCTGACGATTCGAAGAGAATGCCACACTCACAGAATAGCTGTACTGTTAAGAGTGTTGCTTATTGTTCAAAAGTTACTTCAAGAGAACAGG CATGGGTCCAAAAGAGATATATATTACATGCACCCATCAGTATTTTCAGTGCAGTCGTCACAATTTGAACGTGGTCCGTATGTCACTATTTCAGGAGTTT CATTGCTTCTAGCATGTGGTCTTACAGTTTATCTTGTCATCTCAGTTCTTCTTATTGATGCTCATGAGAATCTATATTTTGAAATAAACACAGAATTTGT GGTGATAACATGTTTTAATGCCATTCTGCAGGTGTCTGTTGCTAAAGGGTTGGTTATGGGCTGGATACGGTTTGTCGAAGCTGGAAGGAAGTTTGACTGC ATAAATTCTCTTTCCACGGCCATTCCAATTCCTGTGTACGTTGAGGAAGTCATAGATGTTGTTAGTGTTGCCAAATACATATTGATTGTCGAGAAAGAAT CAGTGTTCCAGCGTTTGGCAAACGACAATTTCTGTGACACCAACCGCTGTATTGTCATCACAGTAGGCACAAGTCCACTCTCTTCTCTCTTGGCTGAACT CTTCACTCCTGATGAAATTAACGGATTTTGTACTTTGCAGGGAAGAGGCTATCCAGATATTCCTACACGAAGGTTGAACCGTATTCCATCTAATGAATTC CTGGTCATTTCCAATCAAGAATTTCAGTCCATAACATCTGCTAGCAGGTTCTTACGACTCCTTATCGAGAAGCTGTGGCTGCCTGTGTATTGCTTGGTAG ACTGTGATCCATATGGATTTGACATCCTGACGACCTATCGATTTGGTTCAATGCAAATGGCATACGATGCAAAGTTTCTGCGTGTCAAGGGAATACACTG GCTTGGGGCTTTTCCTTCTGATGTTGGAAGATATGACATTCCTCAACAGTGTCTCTTGCCTTTGACCACCGAAGACAAGAGAAGAACGGAGAAAATGTTA CTGAGATGCTACTTGGAGAAGCAAGTTCCAGAATGGAGATGGGAACTGGAGATGATGCTGCAGCGGGGAGAGAAGTTTGAGATCGAAGCACTGGCTGTTT TTTTAAGCACTGGCTGTTCATTCACTTTCCTTTCTGTCACAGCAATACATACCATCCAAGATTCAAGGTGGGTTGCATCTTTGATCTTCTTTCAGAATGC ATGTTCTATTTTCTTCTTTTACTGTGATCGGTATTTAGGGTCAAGAGAGGTACCGATAACTTGA
AA sequence Show only first row Show all	>Lus10016612 pacid=23143992 polypeptide=Lus10016612 locus=Lus10016612.g ID=Lus10016612.BGIv1.0 annot-version=v1.0 MRIGKSKPQLDPFKNFTSLLSIASLASLSLRSSNLIGILGGGERGLNFPRCKKQEYLDISSNNYSSLGPDFGSRFFGEFDTLLSSCEKLDYLNIYGNRFF GEFDTLLSSCEKLDYLNIYGNRFFDFTRSLVKALSGGRSPTITIDKFSNYCTHPHGNCCCGSDMPEGQELLTIRRECHTHRIAVLLRVLLIVQKLLQENR HGSKRDIYYMHPSVFSVQSSQFERGPYVTISGVSLLLACGLTVYLVISVLLIDAHENLYFEINTEFVVITCFNAILQVSVAKGLVMGWIRFVEAGRKFDC INSLSTAIPIPVYVEEVIDVVSVAKYILIVEKESVFQRLANDNFCDTNRCIVITVGTSPLSSLLAELFTPDEINGFCTLQGRGYPDIPTRRLNRIPSNEF LVISNQEFQSITSASRFLRLLIEKLWLPVYCLVDCDPYGFDILTTYRFGSMQMAYDAKFLRVKGIHWLGAFPSDVGRYDIPQQCLLPLTTEDKRRTEKML LRCYLEKQVPEWRWELEMMLQRGEKFEIEALAVFLSTGCSFTFLSVTAIHTIQDSRWVASLIFFQNACSIFFFYCDRYLGSREVPIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Lus10016612 [exp]	0	1
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10043299 [exp]	2.8	0.8075
AT5G66130		ATRAD17	RADIATION SENSITIVE 17 (.1)		Lus10028430 [exp]	4.0	0.8315
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Lus10004416 [exp]	4.0	0.7986
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10027351 [exp]	11.3	0.7648
AT1G69550			disease resistance protein (TI...		Lus10040368 [exp]	12.3	0.7592
					Lus10005797 [exp]	13.5	0.8214
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10000316 [exp]	14.1	0.7967
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10009823 [exp]	15.8	0.8040
AT5G10110			unknown protein		Lus10022498 [exp]	16.1	0.7962
AT4G23440			Disease resistance protein (TI...		Lus10032275 [exp]	17.9	0.7912

Compare expression of checked genes

Lus10016612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.