Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55630 254 / 1e-83 ATTPK1, ATKCO1 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) AT4G18160 125 / 1e-33 KCO6, ATTPK3, ATKCO6 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) AT5G46370 125 / 2e-33 KCO2, ATTPK2, ATKCO2 Ca2+ activated outward rectifying K+ channel 2, TANDEM PORE K+ CHANNEL 2, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2, Ca2+ activated outward rectifying K+ channel 2 (.1) AT4G01840 120 / 1e-31 KCO5, ATTPK5, ATKCO5 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) AT1G02510 109 / 2e-28 KCO4, ATKCO4, ATTPK4 CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, Outward rectifying potassium channel protein (.1) AT5G46360 40 / 0.0006 KCO3, ATKCO3 Ca2+ activated outward rectifying K+ channel 3, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3, Ca2+ activated outward rectifying K+ channel 3 (.1), Ca2+ activated outward rectifying K+ channel 3 (.2) AT4G22200 40 / 0.0008 AKT3, AKT2/3 potassium transport 2/3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004417 [exp] 412 / 6e-146 AT5G55630 329 / 2e-111 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10001912 [exp] 256 / 1e-84 AT5G55630 331 / 2e-112 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10000044 [exp] 172 / 1e-53 AT5G55630 246 / 1e-81 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10004611 [exp] 135 / 6e-37 AT4G18160 424 / 1e-146 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Lus10015265 [exp] 132 / 6e-35 AT5G46340 849 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) Lus10004525 [exp] 120 / 3e-31 AT4G01840 402 / 3e-137 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Lus10004538 [exp] 116 / 3e-30 AT4G18160 362 / 2e-123 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Lus10029261 [exp] 80 / 1e-18 ND 64 / 2e-14 Lus10007670 [exp] 44 / 0.0001 AT4G32650 724 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G366800 [exp] 311 / 2e-106 AT5G55630 370 / 1e-127 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.008G004600 [exp] 305 / 9e-104 AT5G55630 324 / 1e-109 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.008G004700 [exp] 270 / 2e-90 AT5G55630 323 / 2e-109 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.016G007200 [exp] 249 / 4e-82 AT5G55630 353 / 2e-121 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.001G352500 [exp] 135 / 4e-37 AT4G18160 449 / 4e-156 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.014G113700 [exp] 134 / 6e-37 AT4G01840 420 / 3e-146 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Potri.002G187600 [exp] 122 / 1e-32 AT4G01840 468 / 6e-165 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Potri.011G079100 [exp] 118 / 8e-31 AT4G18160 436 / 2e-151 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.005G203000 [exp] 117 / 1e-30 AT4G18160 308 / 5e-102 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.002G059200 [exp] 117 / 1e-30 AT4G18160 303 / 6e-100 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF07885 [flax] [poplar] Ion_trans_2 Ion channel
Representative CDS sequence Show only first row Show all	>Lus10016613 pacid=23143942 polypeptide=Lus10016613 locus=Lus10016613.g ID=Lus10016613.BGIv1.0 annot-version=v1.0 ATGGCCTGCAATGATCCAAGAGAGCCCTTGCTTTCACGGCCTGACAATCAGAATCCTCCAATACGTGTAGTAAATGCTCCAAAGAGAAGAATACTGAGAC GTGTTAGGAGTGCTCCTCAAGCAGATTTTGTTCCTCCTGCAGCTCCGATTGGCAATGACAATGGATCAATTCCACGTCCGGATACAATCTGTGGGGAACT TCACCCTAGTTTAAAGAAAGTAGCTGTTTACTTAGCTATCTACTTGGGCCTTGGCACTTTATCCTTTTATGTTGTGAGGGATGATATCAAAGGGAAGAAG ACAAATGATCTTCTCGATGCTCTATATTTCTGTGTTGTTACCATGACCACTGTAGGGTACGGAGACTTGGTTCCAAGTAGTTCTGCCACAAAGTTACTTG CCTGTCTGTTTGTCTTCAGTGGGATGGCTCTTGTTGGATTCATAATGAGCAAAGCAGCTGATTACTTGGTAGAGAAGCAAGAGGTTCTGCTTGTGAAGGC AATGCACCTACGAGACAAAATTGGCCCATCTGAAATTCTAAAGGAAGTTGAGACCAAGAAAGCGCAATACAAGTGCATGTTGACTGCAGGAATTCTTTCA GTGCTCATGATCGTCGGAACCATGTTCCTCTACTACGTAGAGAATTTGGGATTAGTCGATTCTTTCTACTGTGTTTGTTCCACCATTACCACCCTAGGGT ATGGTGACAAGAGCTTCTCCACACGTGGTGGGCGGTTTTTTGCTGTGATTTGA
AA sequence Show only first row Show all	>Lus10016613 pacid=23143942 polypeptide=Lus10016613 locus=Lus10016613.g ID=Lus10016613.BGIv1.0 annot-version=v1.0 MACNDPREPLLSRPDNQNPPIRVVNAPKRRILRRVRSAPQADFVPPAAPIGNDNGSIPRPDTICGELHPSLKKVAVYLAIYLGLGTLSFYVVRDDIKGKK TNDLLDALYFCVVTMTTVGYGDLVPSSSATKLLACLFVFSGMALVGFIMSKAADYLVEKQEVLLVKAMHLRDKIGPSEILKEVETKKAQYKCMLTAGILS VLMIVGTMFLYYVENLGLVDSFYCVCSTITTLGYGDKSFSTRGGRFFAVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Lus10016613 [exp]	0	1
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Lus10000044 [exp]	1.0	0.8139
AT1G30440			Phototropic-responsive NPH3 fa...		Lus10023274 [exp]	2.4	0.7871
AT2G33220			GRIM-19 protein (.1)		Lus10023693 [exp]	8.4	0.8051
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10003611 [exp]	13.0	0.7923
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10029155 [exp]	19.4	0.7897
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10017555 [exp]	20.9	0.7436
AT2G34980		SETH1	phosphatidylinositolglycan syn...		Lus10009915 [exp]	28.0	0.7594
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Lus10031378 [exp]	29.9	0.7961
AT1G26300			BSD domain-containing protein ...		Lus10036831 [exp]	31.1	0.7755
AT2G30590	WRKY	WRKY21	WRKY DNA-binding protein 21 (....		Lus10018776 [exp]	36.5	0.7386

Compare expression of checked genes

Lus10016613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.