Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55700 710 / 0 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT4G17090 391 / 1e-130 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT3G23920 371 / 2e-122 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT4G00490 321 / 1e-103 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT4G15210 318 / 6e-103 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT2G32290 311 / 2e-99 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT2G45880 283 / 3e-87 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G18670 256 / 1e-78 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1) AT5G45300 248 / 3e-74 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022516 [exp] 919 / 0 AT5G55700 637 / 0.0 BETA-AMYLASE 6, beta-amylase 4 (.1.2) Lus10011035 [exp] 387 / 2e-129 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10001087 [exp] 386 / 1e-128 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10004396 [exp] 380 / 4e-126 AT3G23920 848 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10023700 [exp] 377 / 4e-125 AT3G23920 783 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10003005 [exp] 358 / 3e-118 AT4G17090 709 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10040134 [exp] 348 / 8e-114 AT4G17090 735 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10039701 [exp] 319 / 1e-101 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10018491 [exp] 315 / 4e-101 AT4G15210 697 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G085500 [exp] 398 / 3e-133 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.001G148900 [exp] 394 / 6e-132 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.010G062900 [exp] 376 / 2e-124 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.008G174100 [exp] 372 / 8e-123 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.017G040800 [exp] 315 / 7e-101 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.014G083800 [exp] 313 / 2e-100 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.003G143500 [exp] 311 / 2e-99 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.001G087600 [exp] 308 / 2e-98 AT3G23920 459 / 3e-156 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.008G204200 [exp] 304 / 6e-97 AT5G18670 552 / 0.0 BETA-AMYLASE 9, beta-amylase 3 (.1) Potri.014G083700 [exp] 280 / 2e-86 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01373 [flax] [poplar] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Lus10016615 pacid=23143951 polypeptide=Lus10016615 locus=Lus10016615.g ID=Lus10016615.BGIv1.0 annot-version=v1.0 ATGGCGGAATCCGGACCAATTGCACACATGCTGCGGAGCAGGACCTGCTGCGTTTTCAAGGAGATAAGTTTCATTGACAGGCGAAGAGTGCGAACCAAAC TCCATAATGTATCGATGGTCGCTCCCTTCAAGAAGCACCTCTTTGGCTCGCGTTGGCGATCTCTCAGCGTCAGCTACCGCATTCTGAGCATGGATGCTCG AGAAAAATCAACTTCTACTGTACTGGATTCATCAAAGCACAAGAGGGTACCAGTGTTCGTGGTGATGCCGATTGATACCTTTGGTTGTGATGCATCTGGA AGTCTGAGGATCAAAAGACTGAAGGCATTAACTGTCTCTCTAAAAGCACTGAAGCTGGCAGGTGTCCATGGAATTGCGGTGGAGTTGTGGTGGGGAATTG TGGAACGTTTTGCTCCTCTTGAATATAATTGGAGCCTTTATGAAGATCTCTTCAAACTGATTTCAGAATCAGGGCTCAAGTTGCATGTTGCCTTAAATTT TCATTCAAATGAACATCAGTATAGAAAGTGGGGCGTGAATCTTCCGCTGTGGATTGTAGAGATTGGTAAATGCAACAAGGATATATATTATCGAGACAGA AGTGGTCAGTCGAATGCTGATTATCTCACACTTGGAGTGGACCGACTACCCCTATTTCATGGGCGGACACCTCTCCAATGTTACGAAGACTTCATCGTTA ATTTTGTTAGCAAATTCGAATCTTATTTGGGGATTGTTATTGAAGAAATAAATGTTGGTCTTGGTCCTTCCGGAGAGCTCAGGTACCCAGCACATCCTCT GGGTGATGGCAGATGGAAATTTCCTGGAATCGGTGAATTCCAATGTTATGACAAATATATGATGAAAGACTTGAGGATGGCAGCATGTCAAGCAGGAAAG CAGGAATGGGGAGACAGGGGACCTCATAATGCTGGTTGTTACAATAGTCTTCCCCAAGGAGTGCCGTTTTTCGAAGATGGACAGGAGAGCTTTCTATCCG ATTATGGATGCTTTTTCCTGGAATGGTACAGTAGCAAGCTAATTTGTCATGCGGATGCTATTCTGGCGAAGGCAGCTAATGCATTGAAGAAGTATCAGGA AAACATAGAAACCTCAATTCTGTTGGTGGCTAAAATTGGTGGAATATATTGGTGGTACCAAACTATATCACACCCAGCTGAACTTACAGCTGGTTACTAC AACACTGCACTTAGAGATGGTTATGATCCTCTTGCATCGATGTTGTCTCGCCATGGTGCTGCACTGCATATTCCCTGCTTAGAGATGATGGACAATGAAA CCCCACCACCTTACCTTTGCAGCCCGGAAGGATTTCTTCAACAGATATGCAGAATTTCAAACAAAAGAATACATTTGATTGGAAGAAATGCGAATGAACG GTTGGATAAGACAGGATTCAGGCAAATACTTGCGAACTGTAATCACCCACAGGCAGAAGCTGTAAGGTCATTTACTTATTTCAGAATGAATGAGAAAATA TTTTCAGCTGAAAACTGGAATAATTTTGTGCCCTTCGTTAGAAAGATGAGTTCAGATTTCTGA
AA sequence Show only first row Show all	>Lus10016615 pacid=23143951 polypeptide=Lus10016615 locus=Lus10016615.g ID=Lus10016615.BGIv1.0 annot-version=v1.0 MAESGPIAHMLRSRTCCVFKEISFIDRRRVRTKLHNVSMVAPFKKHLFGSRWRSLSVSYRILSMDAREKSTSTVLDSSKHKRVPVFVVMPIDTFGCDASG SLRIKRLKALTVSLKALKLAGVHGIAVELWWGIVERFAPLEYNWSLYEDLFKLISESGLKLHVALNFHSNEHQYRKWGVNLPLWIVEIGKCNKDIYYRDR SGQSNADYLTLGVDRLPLFHGRTPLQCYEDFIVNFVSKFESYLGIVIEEINVGLGPSGELRYPAHPLGDGRWKFPGIGEFQCYDKYMMKDLRMAACQAGK QEWGDRGPHNAGCYNSLPQGVPFFEDGQESFLSDYGCFFLEWYSSKLICHADAILAKAANALKKYQENIETSILLVAKIGGIYWWYQTISHPAELTAGYY NTALRDGYDPLASMLSRHGAALHIPCLEMMDNETPPPYLCSPEGFLQQICRISNKRIHLIGRNANERLDKTGFRQILANCNHPQAEAVRSFTYFRMNEKI FSAENWNNFVPFVRKMSSDF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55700		BAM4, BMY6	BETA-AMYLASE 6, beta-amylase 4...		Lus10016615 [exp]	0	1
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Lus10039556 [exp]	5.2	0.8847
AT1G76710		ASHH1 ,SDG26	ASH1-RELATED PROTEIN 1, ASH1 R...		Lus10016600 [exp]	6.1	0.9114
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10041016 [exp]	8.4	0.9081
AT3G11290			unknown protein		Lus10002039 [exp]	8.7	0.8903
AT3G05210		UVR7, ERCC1	UV REPAIR DEFICIENT 7, nucleot...		Lus10004462 [exp]	9.5	0.8760
AT5G61330			rRNA processing protein-relate...		Lus10020496 [exp]	10.2	0.8863
AT5G12230		MED19A	unknown protein		Lus10008738 [exp]	12.1	0.8695
					Lus10021689 [exp]	13.3	0.9075
AT3G51500			unknown protein		Lus10014816 [exp]	15.5	0.8705
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10000403 [exp]	16.9	0.8926

Compare expression of checked genes

Lus10016615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.