Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55730 439 / 7e-153 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2) AT4G12730 385 / 6e-132 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT2G45470 287 / 2e-93 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G60900 269 / 3e-86 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT3G12660 127 / 4e-34 FLA14 FASCICLIN-like arabinogalactan protein 14 precursor (.1) AT3G46550 129 / 4e-33 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT2G24450 102 / 2e-24 FLA3 FASCICLIN-like arabinogalactan protein 3 precursor (.1) AT4G31370 87 / 3e-19 FLA5 FASCICLIN-like arabinogalactan protein 5 precursor (.1) AT5G03170 75 / 4e-15 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT2G20520 73 / 2e-14 FLA6 FASCICLIN-like arabinogalactan 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022517 [exp] 642 / 0 AT5G55730 438 / 2e-152 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10012344 [exp] 388 / 6e-133 AT4G12730 446 / 9e-156 FASCICLIN-like arabinogalactan 2 (.1) Lus10001178 [exp] 386 / 6e-132 AT4G12730 432 / 4e-150 FASCICLIN-like arabinogalactan 2 (.1) Lus10006391 [exp] 384 / 7e-131 AT4G12730 440 / 7e-153 FASCICLIN-like arabinogalactan 2 (.1) Lus10001752 [exp] 303 / 1e-100 AT4G12730 340 / 1e-115 FASCICLIN-like arabinogalactan 2 (.1) Lus10009235 [exp] 280 / 2e-90 AT2G45470 516 / 0.0 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10038004 [exp] 186 / 9e-57 AT2G45470 316 / 8e-108 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10040821 [exp] 125 / 8e-32 AT3G46550 391 / 6e-134 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Lus10016554 [exp] 115 / 2e-28 AT3G46550 398 / 8e-137 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G093500 [exp] 540 / 0 AT5G55730 432 / 4e-150 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.001G367900 [exp] 537 / 0 AT5G55730 454 / 5e-159 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.014G168100 [exp] 410 / 1e-141 AT4G12730 427 / 6e-149 FASCICLIN-like arabinogalactan 2 (.1) Potri.014G071700 [exp] 284 / 3e-92 AT2G45470 494 / 2e-174 FASCICLIN-like arabinogalactan protein 8 (.1) Potri.001G037800 [exp] 140 / 3e-38 AT3G12660 166 / 2e-49 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Potri.018G097000 [exp] 126 / 3e-32 AT3G46550 315 / 3e-104 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.006G174900 [exp] 121 / 2e-30 AT3G46550 326 / 2e-108 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.018G005100 [exp] 110 / 1e-27 AT2G24450 174 / 2e-53 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G276200 [exp] 105 / 1e-25 AT2G24450 159 / 4e-47 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G129200 [exp] 71 / 1e-13 AT5G03170 199 / 9e-64 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10016617 pacid=23143924 polypeptide=Lus10016617 locus=Lus10016617.g ID=Lus10016617.BGIv1.0 annot-version=v1.0 ATGCGCTCCCCGGCGGCATCCCTCCTCCCCCCTCCTCCACTCCTCATTCTCCTCCTTTTCCTCTTCTCCTCCTCCGCCGTCTCCGGCCACAACATTACCC GCCTCCTAGCCAAGCACCCGGAGTTCTCCACTTTCAACCGCTACCTCACCCTCACTCACCTCGCCGGCGAGATCAACGCCCGGACCACCATCACCGTCTG CGCCGTCGACAACGCCGCCATGTCCTCCATCCTCGCCTCCAAACCTTCCATCAACACCATCAAGAACATCCTCTCCCTCCACGTCCTCCTAGACTACTTC GGCCCCAAGAAGCTCCACCAGATCACCAACGGCACCGCACTCGCCGCCACTCTCTTCCAGGCCACCGGATCTGCCCCTGGCTCCTCCGGATTCGTCAACA TTACTGACATGAAGGGCGGCAAAGTCGCCCTCGGACCCGAGGATAACGGCGGCAAACTCGATGTCTTCTTTGTCAAAGGCCTCGAGGAGCTTCCTTACAA CATTTCTGTCATTCAGATCAGCAAGATTCTCCCCTCCGACGTTGCGGCAGCCCCTACTCCGGGTCCCGCCGAGTTGAATTTGACTGACATTATGTCGGCT CACGGTTGTAAGGTGTTCGCCGACACTTTGCTCGCCAATCCTGAAGCTTCCAAAGTTTACCAGGACAATGTGGAGGGAGGATTGACTGTGTTCTGCCCTA TGGACGATGCATTCAAGGCCTTCTTGCCACGGTTCAAGAATCTAACCGCTGCAGGCAAAGTCTCACTCCTTGAGTTCTTCGGGGTTCCTGTCTACATGTC CATGTCAATGTTGAAATCCAACAATGGGGTCATGAACACCCTCGCAACTGATGGTGCCAAGAAGTTTGACTTCACTGTTCAAAATGACGGAGAACAGGTG ACGCTCAAGACCAAGAGCACTACAGCCAGGATCACGGGGACCTTGATGGACGAGCAGCCCCTTGCAGTTTACACCATTGATAAGGTATTGTTGCCTAAAG AGCTGTTCAAGGATGCCCCTTCCCCTACCCCAGCTCCAGCTCCTGCCCCGGACAAGGTTGCCGATGCACCCAAATCTAGCAGCAAGTCAGATGATGATGG GTCACCAGCGGAGTCGCCAGCAGATGGACCTGATGCCGACTCTGACGATCAAACGGCAGACGATGATAGTGCTGCTCTGAGGCTTGCTGGTAGGGAGATT ATCGGAACGGTTGTCAGTTTGTGTGTAGGAGTAATGTTGTTGTAA
AA sequence Show only first row Show all	>Lus10016617 pacid=23143924 polypeptide=Lus10016617 locus=Lus10016617.g ID=Lus10016617.BGIv1.0 annot-version=v1.0 MRSPAASLLPPPPLLILLLFLFSSSAVSGHNITRLLAKHPEFSTFNRYLTLTHLAGEINARTTITVCAVDNAAMSSILASKPSINTIKNILSLHVLLDYF GPKKLHQITNGTALAATLFQATGSAPGSSGFVNITDMKGGKVALGPEDNGGKLDVFFVKGLEELPYNISVIQISKILPSDVAAAPTPGPAELNLTDIMSA HGCKVFADTLLANPEASKVYQDNVEGGLTVFCPMDDAFKAFLPRFKNLTAAGKVSLLEFFGVPVYMSMSMLKSNNGVMNTLATDGAKKFDFTVQNDGEQV TLKTKSTTARITGTLMDEQPLAVYTIDKVLLPKELFKDAPSPTPAPAPAPDKVADAPKSSSKSDDDGSPAESPADGPDADSDDQTADDDSAALRLAGREI IGTVVSLCVGVMLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Lus10016617 [exp]	0	1
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Lus10022517 [exp]	1.0	0.9304
AT1G32860			Glycosyl hydrolase superfamily...		Lus10033244 [exp]	2.0	0.8915
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10004650 [exp]	3.5	0.8900
AT3G17840		RLK902	receptor-like kinase 902 (.1)		Lus10041992 [exp]	4.0	0.8833
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10016092 [exp]	7.5	0.8684
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10017996 [exp]	7.7	0.8813
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10025643 [exp]	8.1	0.8765
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10014853 [exp]	8.4	0.8406
AT3G09070			Protein of unknown function (D...		Lus10035513 [exp]	9.0	0.8664
AT5G24020		ARC11, ATMIND1,...	ACCUMULATION AND REPLICATION O...		Lus10038843 [exp]	9.4	0.8305

Compare expression of checked genes

Lus10016617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.